Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0379 ATGACTAAGGATGTTGAGGTTCAAGGTGAGTACTCTGCTAAGGACTATGAAGACCCACCACCAGCTCCACTTTTTGATTTGGAAGAGCTAACAAAGTGGTCCTTATATAGAGCAATCATTGCTGAATTCATAGCAACACTTCTCTTCCTTTACATCACTATATTAACCATTATTGGTTATAATAGCCAGACTGATAAGAACAAGGGTGGTACTGAATGTGATGGAGTTGGTCTTTTGGGTATTGCTTGGTCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATTTCTGGAGGACACATAAACCCAGCAGTGACATTTGGGCTTTTCGTGGGACGCAAGGTGTCACTAATAAGGGCATTCTTATACATAGTAGCACAGAGTGCTGGTGCTATTTGTGGAGCTGGACTAGCCAAAGGGTTCCAAAGATCATATTTTGAAAGGTATGGAGGTGGTGCCAACTTTGTTCAACCTGGCTACAACAAAGGTACTGCTTTGGGTGCTGAAATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGAAACGCTAGAGACTCCCATGTTCCTGTATTGGCACCATTACCCATTGGATTTGCTGTATTTATGGTTCACTTGGCTACAATCCCAGTTACTGGCACTGGCATCAACCCAGCAAGAAGTTTTGGATCTGCTGTCATTTACAACAAGGACAAAATCTGGGATGATCATTGGATTTTCTGGGTTGGACCATTTATTGGAGCTTTTGTAGCTGCAGTGTATCATCAATACATTCTTAGAGCAGCAGCCATTAAAGCTCTTGGATCCTTCAGGAGCAACAATTAA 852 0.4261 MTKDVEVQGEYSAKDYEDPPPAPLFDLEELTKWSLYRAIIAEFIATLLFLYITILTIIGYNSQTDKNKGGTECDGVGLLGIAWSFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAFLYIVAQSAGAICGAGLAKGFQRSYFERYGGGANFVQPGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGSAVIYNKDKIWDDHWIFWVGPFIGAFVAAVYHQYILRAAAIKALGSFRSNN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0379 283 PANTHER AQUAPORIN PIP2-7 4 282 - -
Lal1g0379 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Lal1g0379 283 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 SUPERFAMILY Aquaporin-like 29 269 IPR023271 -
Lal1g0379 283 Pfam Major intrinsic protein 29 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 CDD MIP 37 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal1g0379 283 Gene3D Glycerol uptake facilitator protein. 22 283 IPR023271 -
Lal1g0379 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 282 IPR034294 -
Lal1g0379 283 TIGRFAM MIP: MIP family channel proteins 41 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0379 Lal-Chr1 2294033 2296218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0379 1 281 Major Intrinsic Protein MIP AT2G37170 78.292 1.96e-167 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0379 K09872 - gmx:100818032 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0379 1 2294033 2296218 Lal1g0379 1 2294033 2296218 ECH
Lal20g0093 20 588654 591908 Lal1g0379 1 2294033 2296218 ECH
Lal1g1816 1 20519335 20521969 Lal1g0379 1 2294033 2296218 ECH
Lal1g0379 1 2294033 2296218 Lal2g0292 2 1697540 1706404 LSH
Lal1g0379 1 2294033 2296218 Lal9g0270 9 1675756 1677887 LSH