Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0378 ATGGCGGAGCCTCTTCTCAACACGGATCTTTCTTCTCCCAAAACCCTAAACCCAATCAACGCTCATGATTCAACCTCCGAATCGCATCCAACGGCTCCCAATGAAACTCAAGTCACTGAAGAAAACGACGCCGTCGTTGCGGGTGAGAAACGGAAGAGAGACGACGGCGACGACCGTTCTCTCCATCCTATGTGGAAGACCAGTCTATGCTCATTCTTTAGACGACAAGACAAAGATTGTAGCCACGGCGACGCGTGTCGCTACGCGCACACAGAGGAGGAGCTACGTCCTCGCCCGGATAACACGTGGGACCCGACCTCCGAGCGTGCGAAGAAAGCGTTGAAGACTAAAGCTGAAGAGAAAAACAGCGTTTTGGAGGATGTCATGGTTACCGAGGCTCTCGTTGATGATGATGACGACGGTGATTCCAATAACGCGCTTAGCAAATGCTTGGGTATACCTTTTAAGCTTGCAAAGAAAAAGAAAGGAATGGCGTTAGGTTTCCTTACATTTGAAGATGAAAACCAAATGAAGAGTGCTTCGAAGGATTTAGATGGAAAATTAGTTGGCGGTGGGGGCAAAAGAATAAAGGTTGCTGATGTCATTCCTCGATCTTTTGAAAAGAAAAGTAATAAGGAAAATACATTGTTGGACGCTGAAACAAACGGTGATAATTCAAAGCCAAGAAATGTGCGTGATGTAGTGACCCCTCTAGCTCACATGGATTATGCTGATCAACTGGAGCAGAAAAAAACATCCCTCATGCAGATGCTCAAAAAGCTTACTAGAAATGCTCGTAAAGCTTGTCCAGATGGCGTTTCTCTTCCTGAGTGGGTTCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGTGAACTAGAGGGTATCATTGCATCACCACTTGTAAATGGATATCGTAATAAGTGTGAATTTTCTGTCGGGTATTCTCTGGAAGGCAAAGTAACAGTGGGCTTCATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGTCCGAATGTTTCTGCAATTGCTCGCAAATATGCTACCATCTTTCAGGAATTTCTGCAGCATTCTGATTTACCAGTCTGGAACAGATTTAAAAATAATGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGACTAATGGAAATGCTGTTGATGCTGAAACTTTTGATGGTATTGCAGAGGTCATGCTTATGGTGCAGGTTTCTACATCTGGCGTTGATGATGCACACGTTGCTGCTGAATTTAAGAGACTTGCTGAGGCTTTTGTTGCTGGAGCTACTTCACATTCTCCATCATTGCCACTCACAGCTCTGGTTGTGCAGGATCACCAAGGAATATCCAATGTAGCACCCGCTGATGCACCGCTGTGTTCACTTCACATTTCTAAAGCAGTTAGTGCTCCTGATATGGAAGGAAAAAATGCCATGGATGTAAGAATCCATGATTATGTCAGCAATCTCCGGTTTTCTATATCTCCGACAGCATTTTTCCAGGTTGGGATGGCAATCATTGATTTTAAGAGTCTCCTTGTCCCCCATGTTAACACTCTTGCTGCCGAGAAGCTATACTCACTTGCTGGAGATTGGGCACAATTAGGTCCCGATACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACTTTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCTGTATCTGATGCTCATAGGAATGCTGAGATTAATGGCATAAAAAACTGTAGATTTATTTGTTCAAAGGTGAGGTCAACAATCTTGATTTTAAGCCCTGTAACATTGCAACTTTTGCTTGCTGGCTTATTTATGAGGTATCAGGCAGAGGATGTCATGGGATCGCTGTTAACAGAATACCTAAATGTGCCAAAGGAAGAAGTTGATGATCCTAATATATCTGGCAGTAACATTGATGGCTCCGAGGGCAGTTCCTGCCAAGAGCCTAATGAAAATGGTGAAAGAGTATCTCTACTATCTCATTGTTCAGAAATTAACAGTGCAGACAATGATGCCTCTGAGGCTAGTGCCTCCGAAGTGCCTGAAAATGGTGAAAAAACAACTCAGTGTTCAGAAAATGACAATGCAGAGATCGGAAGTGGCGTTCAGAAATGTAGCAGTTCTGAAAATGGAAATTCTTCCTTGCAGCAGTTTAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTGCATCCAACTGTGATCAAGGCTTTGAGAACTCATCCAGGCTTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAAGTTTGGTAGCAAATGCAATTGAGCTTTGTACGCCATCTCCCGAAAAAATTGAGAAAGGAAATAAAGGCAACCGGGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGGCATAGGTCCAAGTCTATGCCCATCTCTGAGGCGTTCAAACCAGTAAAAGCAATGGCTGTTGATCTTTTTCCACATACTCCGCATTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2541 0.4408 MAEPLLNTDLSSPKTLNPINAHDSTSESHPTAPNETQVTEENDAVVAGEKRKRDDGDDRSLHPMWKTSLCSFFRRQDKDCSHGDACRYAHTEEELRPRPDNTWDPTSERAKKALKTKAEEKNSVLEDVMVTEALVDDDDDGDSNNALSKCLGIPFKLAKKKKGMALGFLTFEDENQMKSASKDLDGKLVGGGGKRIKVADVIPRSFEKKSNKENTLLDAETNGDNSKPRNVRDVVTPLAHMDYADQLEQKKTSLMQMLKKLTRNARKACPDGVSLPEWVLKSREIGGLPCELEGIIASPLVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSAIARKYATIFQEFLQHSDLPVWNRFKNNGFWRQLTVREGRTNGNAVDAETFDGIAEVMLMVQVSTSGVDDAHVAAEFKRLAEAFVAGATSHSPSLPLTALVVQDHQGISNVAPADAPLCSLHISKAVSAPDMEGKNAMDVRIHDYVSNLRFSISPTAFFQVGMAIIDFKSLLVPHVNTLAAEKLYSLAGDWAQLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICSKVRSTILILSPVTLQLLLAGLFMRYQAEDVMGSLLTEYLNVPKEEVDDPNISGSNIDGSEGSSCQEPNENGERVSLLSHCSEINSADNDASEASASEVPENGEKTTQCSENDNAEIGSGVQKCSSSENGNSSLQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPESLVANAIELCTPSPEKIEKGNKGNRGWRNMSSAGLARHRSKSMPISEAFKPVKAMAVDLFPHTPHCELVMLLER 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0378 846 MobiDBLite consensus disorder prediction 44 60 - -
Lal1g0378 846 Gene3D - 305 500 - -
Lal1g0378 846 Pfam Methyltransferase domain 546 599 IPR025714 -
Lal1g0378 846 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 619 846 IPR045850 -
Lal1g0378 846 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 80 602 IPR045850 -
Lal1g0378 846 Gene3D - 57 98 - -
Lal1g0378 846 MobiDBLite consensus disorder prediction 8 41 - -
Lal1g0378 846 MobiDBLite consensus disorder prediction 685 726 - -
Lal1g0378 846 MobiDBLite consensus disorder prediction 649 668 - -
Lal1g0378 846 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 234 846 IPR010280 GO:0006396|GO:0008173
Lal1g0378 846 MobiDBLite consensus disorder prediction 643 668 - -
Lal1g0378 846 MobiDBLite consensus disorder prediction 1 60 - -
Lal1g0378 846 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 65 90 IPR000571 GO:0046872
Lal1g0378 846 MobiDBLite consensus disorder prediction 789 811 - -
Lal1g0378 846 Coils Coil 244 264 - -
Lal1g0378 846 CDD AdoMet_MTases 548 600 - -
Lal1g0378 846 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 619 846 - -
Lal1g0378 846 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 80 602 - -
Lal1g0378 846 Gene3D Vaccinia Virus protein VP39 501 614 IPR029063 -
Lal1g0378 846 Gene3D Vaccinia Virus protein VP39 680 846 IPR029063 -
Lal1g0378 846 Pfam tRNA (Uracil-5-)-methyltransferase 729 781 IPR010280 GO:0006396|GO:0008173
Lal1g0378 846 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 236 846 IPR029063 -
Lal1g0378 846 SMART c3hfinal6 64 92 IPR000571 GO:0046872
Lal1g0378 846 ProSitePatterns RNA methyltransferase trmA family signature 1. 741 773 IPR030390 -
Lal1g0378 846 SUPERFAMILY CCCH zinc finger 62 97 IPR036855 GO:0046872
Lal1g0378 846 ProSiteProfiles Zinc finger C3H1-type profile. 64 93 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal1g0378 tRNA_U5-meth_tr 1e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0378 K15332 - gmx:100777601 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0378 1 2284574 2289530 Lal1g0378 1 2284574 2289530 ECH