Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0376 ATGTTCAATAAGACTAGTTCTTTTGCCAAAGCGATGGGCTGTTGTAATTGCTTTGGGTTCATCAGGAGACCGAGACGCCAAAGGCCTAACCCCACTGTCAACAACAATAAAAATCTCTCCCAGGAGCTGTTGTTGGATGATGACATTGACGACGATGATCATTCGTATAATGACAGTGCTACCAACACCAGTAGTGGGGATGATAGTGAGTTGCAAGCTCGTCCAAAAAGATCAGAGGATATTTTGAATTTGAGAGTAGAAAATGGCATGATGTGTAGGCAGTATCCTGTTAAGGAGACTCAGAAACTTGTTCGCACAGAGGATGAAAACGGGAACAAAATGCTAAACGAGTATGTTCGCGAGTGTAAGATTGGTTCCGGAAGCTATGGGAAAGTGGCCCTCTATCGAAGCGCACTCGACGGAAACCATTATGCAATAAAGGCCTTTCATAAGTCTCATTTACTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGACTGATGTCCTACGTGAGGTACTCATTATGAAAATGGTGGAACATCCTAACATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATCGCTTCTACATGGTACTTGAATATGTGGAAGACAAATGGGTTTGCCAGGGTACGGGTCCTGCTTGTGGCTTGGGTGAAGAGACTGCTAGGAGATATTTGCGTGATATAGTTTCTGGATTGTCATATCTCCATTCTCATCACATAGTACATGGGGATATTAAACCTGATAATCTGCTGATTACTCGTCACGGTACAGTGAAAATAGGGGATTTCAGCGTCAGCCAGGCTTTTGAGGATAATAATGATGAGCTTCGACGATCACCTGGCACTCCTGTTTTCACCGCACCAGAATGTATTCTAGGTCTTACCTATCATGGTAAAGCTGCAGACACATGGGCAGTAGGAATTACTTTATACTGTATGATATTGGGCGAATACCCTTTTCTTGGAGACACACTTCAAGATACATATGACAGGATAGTCAATAATCCTATAGTACTCCCAAATGATATGAACCCACAGTTAAAGAACTTAATAGAAGGACTACTTTTCAAAGATCCAAGACTAAGGATGACATTGAGTGATGTTGCAGAGCATAGCTGGGTTATTGGAGATGATGGGCCAATTCCTGGGTACCTGTGTTGGTGCCAAAGAAAGTGCTTGGAAAGGGAAGACGCGGATTAG 1215 0.4329 MFNKTSSFAKAMGCCNCFGFIRRPRRQRPNPTVNNNKNLSQELLLDDDIDDDDHSYNDSATNTSSGDDSELQARPKRSEDILNLRVENGMMCRQYPVKETQKLVRTEDENGNKMLNEYVRECKIGSGSYGKVALYRSALDGNHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDRFYMVLEYVEDKWVCQGTGPACGLGEETARRYLRDIVSGLSYLHSHHIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDNNDELRRSPGTPVFTAPECILGLTYHGKAADTWAVGITLYCMILGEYPFLGDTLQDTYDRIVNNPIVLPNDMNPQLKNLIEGLLFKDPRLRMTLSDVAEHSWVIGDDGPIPGYLCWCQRKCLEREDAD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0376 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Lal1g0376 404 SMART serkin_6 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0376 404 MobiDBLite consensus disorder prediction 48 77 - -
Lal1g0376 404 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 404 - -
Lal1g0376 404 ProSiteProfiles Protein kinase domain profile. 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0376 404 Pfam Protein kinase domain 118 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0376 404 SUPERFAMILY Protein kinase-like (PK-like) 114 386 IPR011009 -
Lal1g0376 404 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Lal1g0376 404 Gene3D Transferase(Phosphotransferase) domain 1 217 385 - -
Lal1g0376 404 CDD STKc_LKB1_CaMKK 124 379 - -
Lal1g0376 404 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 404 - -
Lal1g0376 404 Gene3D Phosphorylase Kinase; domain 1 112 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0376 Lal-Chr1 2274968 2279807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0376 124 386 CBL-interacting serine-threonine protein kinases AT5G35410 33.209 1.60e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lal1g0376 Pkinase 2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0376 K00908 - gmx:100789178 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0376 1 2274968 2279807 Lal1g0376 1 2274968 2279807 ECH
Lal1g0376 1 2274968 2279807 Lal9g0265 9 1645139 1650564 LSH