Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0374 ATGTCTGAAGATTTATTCTCTCTTCCTTCTAACCCCACCAGAAGCAACTTGCTTCATGTTCAAGATCCAAACTCAAACCCTAATCCTAACCCTAATTCAAACCCATCCAAGAAAAAGAGAAACCTACCTGGAAACCCAGGCAATTCAGAAGTGATAACTCTATCCCCAAAGTCCCTTATGGCAACTAATAGATTCATCTGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAACTTACAGCTGCATAGGAGAGGGCATAACCTTCCATGGAAGTTGAAGCAAAGAACAAACAAAGATCCAGTGAGGAAGAAGGTTTATGTGTGCCCAGAGAAGAGTTGTGTGCACCATGACCCTTGTAGAGCACTAGGGGACTTGACTGGGATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAAAAATGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCCCATAGCAAGATTTGTGGGACTAGAGAGTATAAATGTGACTGTGGCACCCTTTTCTCCAGGAAGGACAGTTTCATAACACACAGAGCCTTTTGTGATGCATTAAATCAAGAAAGTGTGAGAGTTCCATCAGTTTTAAGTAACTTGAGAAGTATTAATCTGACCAATCAAGTGCCTAGAATCCCTCAGATTTTTCCAGAATTTCATTCAGAAGTTGAAGGTAATTATGCCAACAATTCACATCAGCTTCATTGCTTCCCAGGCAAATTAAGTGCTTTCTCATCAAATGCAAACTGTGTTGCCAACACCCATATGTCTGATTTAGTGGAAACAATGAACATGTTTGGGTCAACACCTCAACAAACACAGTGGCTGAATTACCAAGCATCATTCACAAGTGGCAATAACAACAACTTATCTATGCCATTGCCTGCACTACTGCCACATGGAGTGAAGCAAGAACAAGAAGAAAACAAACAAGACTTGTCTCATATTGCTGCAAACTCTGTGTACTTCATGTCAGCCACATCAATGTTGCACACAGATAACTCTTCATCCACCTTCAACAACAACAACAACAACAGCAACAATCATAACGTTTTTGACATCATCGGCTCAAATATTCTCTCAAACACATCAAGGATGAATAATCACAATATTGTAGGGGTTCATAAGTTTTTCAAGGAAGGGAACTTGAATCATGAACCGATGAACTTTGAAGGCGGCAACACCAACTTTGGAGGTGGTTTTTCAATGGATGATTCAAGCTCAAATAATAATAAGGACCAGCTTGGTTTAACAAGAGATTTTTTGGGTGTTGGAGATGATTCAATAGCAATAAACAGACCCTTTGATCTGGCTGAGTTTAATGCAATGGGATCAGCCATGGAGGTGAATAATAGCCATTATGGTGGACATTACTGCTAG 1401 0.4026 MSEDLFSLPSNPTRSNLLHVQDPNSNPNPNPNSNPSKKKRNLPGNPGNSEVITLSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDPVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALNQESVRVPSVLSNLRSINLTNQVPRIPQIFPEFHSEVEGNYANNSHQLHCFPGKLSAFSSNANCVANTHMSDLVETMNMFGSTPQQTQWLNYQASFTSGNNNNLSMPLPALLPHGVKQEQEENKQDLSHIAANSVYFMSATSMLHTDNSSSTFNNNNNNSNNHNVFDIIGSNILSNTSRMNNHNIVGVHKFFKEGNLNHEPMNFEGGNTNFGGGFSMDDSSSNNNKDQLGLTRDFLGVGDDSIAINRPFDLAEFNAMGSAMEVNNSHYGGHYC 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0374 466 Gene3D Classic Zinc Finger 119 199 - -
Lal1g0374 466 SMART c2h2final6 107 137 IPR013087 -
Lal1g0374 466 SMART c2h2final6 142 162 IPR013087 -
Lal1g0374 466 SMART c2h2final6 65 87 IPR013087 -
Lal1g0374 466 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Lal1g0374 466 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Lal1g0374 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 437 - -
Lal1g0374 466 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 20 437 - -
Lal1g0374 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Lal1g0374 466 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Lal1g0374 466 MobiDBLite consensus disorder prediction 1 50 - -
Lal1g0374 466 Gene3D Classic Zinc Finger 48 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0374 Lal-Chr1 2265403 2267176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0374 15 209 IDZ Gene Family AT5G60470 74.752 3.59e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal1g0374 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0374 K25870 - gmx:100781896 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0374 1 2265403 2267176 Lal1g0374 1 2265403 2267176 ECH
Lal1g0374 1 2265403 2267176 Lal9g0264 9 1641314 1643146 LSH
Lal10g1237 10 18674067 18676146 Lal1g0374 1 2265403 2267176 PCT
Lal8g0137 8 941929 944189 Lal1g0374 1 2265403 2267176 PCT
Lal1g0374 1 2265403 2267176 Lal10g1237 10 18674067 18676146 PCT
Lal1g0374 1 2265403 2267176 Lal8g0137 8 941929 944189 PCT