Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0372 ATGGAAATTGATCTGAACCATGCATTCTGTAATGGGGAATGTGATGAGAAAGGTGCTTGTGTTTGTTATTTGTCCTCCTCTAATTCAACTTGTTCATCTTCTACTTCTTCATTTCATGTGTCTTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGGTCTCTCACTTCACTGCCAAAGAAAGGAAATGTTGTTGTCTATTTTCCACAAGGTCACTTAGAACAGGTTTCATCTTTCACACCAATGGAGATGCCCACTTATGATCTTCAGCCACAAATCTTCTGCAGGGTTGTCAATGTCCAATTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCCGAGTTGGAAGGGATGCATTTAGAGGGCAAAGAGCTTGAGGAATTAGAAGCAGATGATGAGAAAATTGGAGGATCACCTACAAAACCAACCCCTCACATGTTCTGCAAAACACTTACTGCTTCTGATACAAGCACTCATGGAGGATTTTCTGTTCCTCGTAGAGCCGCTGAAGAGTGTTTTCCTCCTTTGGATTATACGCAGCTGAGACCCTCTCAAGAACTTGTTGCCAAAGACCTGCATGGTGCTGAGTGGAAATTTAGACATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGGTGGAGTGTTTTTGTTAGCCGAAAAAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTGAGGGGTGAAAATGGAGAATTGAGACTAGGAATCAGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAACTGTTATTCCAATTTCCTTTCTTCTGTGGCTAATGCCATATCAACCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACCCAGACTTTGTTGTGCCCTACAGAAAATATGTTAAAAGCATCAAGAATCCAGTGACCAATGGGACAAGATTCAAAATGAGATTTGAAATGGATGTATCTACAGAAAGAAGGTGCAATAGTGGTATGGTGATTGGAACTTGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTTAGATGGGACGAGAATATCGAAAGCAATCATCAAGACCGGGTATCTCCATGGGAGATTGATCCTTCTGCTTCTCTCCCTCCCATGAGCAATCATTCATCGGCAAGACTGAAGAAACTGCGAACGTTTCAGCAGGCTGCCTCTCCTACCCACCTCATTACTGGTATGGATCCTAATGCTATGATGACTAAGGAAATGTTCGGGGTGGCAGCAGGAGGCAAAGGACTAAATGACTTTGAGGAGTCTATGAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAATCAGGTTTTGTTTCACACTATTATGGAAGTAATACAGTAAGAAAGGGCAACTCTGCTGAGCTTATGAGCATTCAACCTTTAAGTTATGCAGCCTATATGGAAACTAATAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCTTGTCAGGAAAGGTTGATTTCAACCTTGGTGCTTGGGGAAATCCCAATATCAGTTACACAAACTTGCATCAGGCAACCAAACCCAACTTTCAATCTTTAGGACCACAGGTTCTTCAATCTGCATATTTTCCTCATGGAGATATTAACAAAGATGGTCGAGCTAGCATGTTTTGCTCTAAACCTACAAATCTCCAGAGAGAGAACAGTCCTAACAACACAACTTCAACTCAGGCAAGGACCGTGAGAATCGAAATTGGACAATCAGATCTCTCAAATGAGCATAAGCTACAGGATAGTGTTTCTGCTGCTGCATCATTAGCGGCATCAAATATGAGGTTTCCAACTGAAAACAATGTCAAGGAGGAGGTAAATGCCTGCAAACTATTTGGATTTCCTTTGTCTGGGGAAAGAACTACTACCCAAAATTTACAGAACTCTGCTAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTGAGCTGCTACAATGACCTGCTGAGTGAACTAGAGAAACTATTTGGCATGGAAGGCCTTCTAAGAGATCCTGATAAGGGATGGAGGATCCTATACACTGACGGTGAGAATGACATAATGGTTGTTGGGGATGACCATTGGCATGAGTTTTGCAATATGGTGTCCAAAATCCATATATATACCCAAGAAGAGGTGGATAATATGACAATTGGGATGACCAGTGATGATACTCATAGCTGTTTGGAACAGGCACCAATGATCATGGAGGCATCAAAGTCATCCTCAGTGGGCCAGCCAGATTTTTCTCCAACAGTAGTTAGAGTCTAA 2361 0.4227 MEIDLNHAFCNGECDEKGACVCYLSSSNSTCSSSTSSFHVSSSYLELWHACAGSLTSLPKKGNVVVYFPQGHLEQVSSFTPMEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMHLEGKELEELEADDEKIGGSPTKPTPHMFCKTLTASDTSTHGGFSVPRRAAEECFPPLDYTQLRPSQELVAKDLHGAEWKFRHIYRGQPRRHLLTTGWSVFVSRKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQNCYSNFLSSVANAISTKSMFHVFYSPRASHPDFVVPYRKYVKSIKNPVTNGTRFKMRFEMDVSTERRCNSGMVIGTCDLDPYRWPKSKWRCLMVRWDENIESNHQDRVSPWEIDPSASLPPMSNHSSARLKKLRTFQQAASPTHLITGMDPNAMMTKEMFGVAAGGKGLNDFEESMRSSKVLQGQEKSGFVSHYYGSNTVRKGNSAELMSIQPLSYAAYMETNRFPRVLQGQEICPLKSLSGKVDFNLGAWGNPNISYTNLHQATKPNFQSLGPQVLQSAYFPHGDINKDGRASMFCSKPTNLQRENSPNNTTSTQARTVRIEIGQSDLSNEHKLQDSVSAAASLAASNMRFPTENNVKEEVNACKLFGFPLSGERTTTQNLQNSARSCTKVHKQGSLVGRAIDLSRLSCYNDLLSELEKLFGMEGLLRDPDKGWRILYTDGENDIMVVGDDHWHEFCNMVSKIHIYTQEEVDNMTIGMTSDDTHSCLEQAPMIMEASKSSSVGQPDFSPTVVRV 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0372 786 Pfam Auxin response factor 281 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal1g0372 786 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 774 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal1g0372 786 SMART B3_2 155 257 IPR003340 GO:0003677
Lal1g0372 786 SUPERFAMILY DNA-binding pseudobarrel domain 147 266 IPR015300 -
Lal1g0372 786 SUPERFAMILY CAD & PB1 domains 659 737 - -
Lal1g0372 786 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Lal1g0372 786 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Lal1g0372 786 PANTHER AUXIN RESPONSE FACTOR 16 774 - -
Lal1g0372 786 CDD B3_DNA 153 255 IPR003340 GO:0003677
Lal1g0372 786 ProSiteProfiles PB1 domain profile. 658 742 IPR000270 GO:0005515
Lal1g0372 786 Gene3D - 153 257 IPR015300 -
Lal1g0372 786 Gene3D - 654 747 - -
Lal1g0372 786 Gene3D - 319 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0372 Lal-Chr1 2238373 2248840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0372 40 786 B3 DNA Binding Superfamily AT5G60450 56.684 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal1g0372 B3 2.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0372 - - lang:109351638 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0372 1 2238373 2248840 Lal1g0372 1 2238373 2248840 ECH
Lal1g0372 1 2238373 2248840 Lal2g0278 2 1629921 1635716 LSH
Lal25g0172 25 1101948 1109819 Lal1g0372 1 2238373 2248840 PCT
Lal1g0372 1 2238373 2248840 Lal25g0172 25 1101948 1109819 PCT