Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0366 ATGGACTCAACAGAAGACTTGCACCGCCTCCTCTCGGAACAACGCCGTGAACTCGCAGCGGCGGAAGCCATGGACTCCGACCTTGACTTCGCCTTCCGCCTCCAATTAGAGGAAGCCCTAGCCGCTTCCCTCGCCTCTAACCCCTCCCCCTCCTCTTCCTCCCTCCCCAACGACCAACAACCCATCCCTGACGACACCGTTTTGAACGCTACGGCAATTCAACTCGAAGAGTTCTTTCGCGCGGAGCAGGAAATCAAGGACCGCGAGATGATCGAGGTCGAGACTAGTAAAATGAGAGAAGATCTCTGCCGTCGGATTCACGATCAAAAAGTCGCAACTGAAATGATGAAGATTCCGGAGGAGGAGTGGGAAGAGTGGGGCGACGAGTTTGAGAAACCGTTTGGTGAAGGTTCTTCCTGTTCGAAGGGTCCGGTTCGGTTCGATGAGAATGATATTTGTAGGGTTTATTTTAAGGGTTTGGTTAGTATAGAGTGGGTTAGGGGTGAGAAGGTTGTGTTGGCTGGGATTGGTGTTGCGATTTGTGATCCTTCTGATAATGTGATTCTTGAATTGGCGAAACCGTTAGTTGGGAATGGATTGAGTAAAGTTACTGCTGAAGCCAAGGCTTTGATCGAAGGTTTCAATGCTGCTATTGCTTTGGACTTGAAGCGTGTTGCGTATTATTGTGATTACTATCCTCTCTTTCAATATGTGAGTGGAAAATGGCCTGCTAAACAGCGGAAGATTTCTATGCTAATTAATCAGGTGAATCTGCTTCGAAGAAATTTTACATTCTGCAACCCAGTCCTTGTGGCAAGACAAGATGTCAAATTTGCATTTAAGCTTGCAAGAGATGCAATTATTTCTCAGTTCACATGGCCGAAAGAATCTGGGAATGGAAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTGATCTGTCTCATATTTTTTCTGTTGATGGCTGTCAGCACCAATACTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGAGCCAAAATGCCCTCATGAAGGATGCAATTTGGTGCTTCTAGTGGACAGCTGCAGGAAATTCTTGACTCCTAAATTAGTTGAGACCATGCAGCTACGTAAATTGGAAGCTTCAATTCCTATCACTGACAAAATCTATTGTCCTCATCCAAGATGCTCTGCATTAATGTCAAAAACTGCGGTTTTAGAGTACTCTAAAGGACTTATTGGTGACTCCGAACAGTCAGGGCCCAAGAAATGCATAAAATGTCATGGTCTTTTCTGTTTTAGCTGCAAGGTCCCTTGGCATATTGGTCTCTCATGTGCTAATTACAAAGCTTTGAATCCTAACCCTCCTGCTGAGGATGTGAAGTTGAAGTTTCTGGCAACAAGGAGTCTATGGCGTCAGTGTGTGAAGTGTAACCACATGATTGAACTTGCAGAAGGCTGCTATCACATGACTTGCAGATGTGGTAACGAATTCTGCTACAACTGTGGAGCTGTGTGGAAGAACAAAAAAGCAACATGTTCCTGTCCACTTTGGGCAGAGGACAACATCTGGTTAGAGGATCATGAGTCTGAAGAAGAAGATGATGATGATTATGATTATGAATCTGATTATTCACTTTTTGTGAATAATTATCATCAGTGGTTTTAA 1674 0.4427 MDSTEDLHRLLSEQRRELAAAEAMDSDLDFAFRLQLEEALAASLASNPSPSSSSLPNDQQPIPDDTVLNATAIQLEEFFRAEQEIKDREMIEVETSKMREDLCRRIHDQKVATEMMKIPEEEWEEWGDEFEKPFGEGSSCSKGPVRFDENDICRVYFKGLVSIEWVRGEKVVLAGIGVAICDPSDNVILELAKPLVGNGLSKVTAEAKALIEGFNAAIALDLKRVAYYCDYYPLFQYVSGKWPAKQRKISMLINQVNLLRRNFTFCNPVLVARQDVKFAFKLARDAIISQFTWPKESGNGKNLNETCVICLEDTDLSHIFSVDGCQHQYCFSCMKQHVEVKLLHGMEPKCPHEGCNLVLLVDSCRKFLTPKLVETMQLRKLEASIPITDKIYCPHPRCSALMSKTAVLEYSKGLIGDSEQSGPKKCIKCHGLFCFSCKVPWHIGLSCANYKALNPNPPAEDVKLKFLATRSLWRQCVKCNHMIELAEGCYHMTCRCGNEFCYNCGAVWKNKKATCSCPLWAEDNIWLEDHESEEEDDDDYDYESDYSLFVNNYHQWF 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0366 557 SMART ibrneu5 460 517 IPR002867 -
Lal1g0366 557 SMART ibrneu5 374 447 IPR002867 -
Lal1g0366 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 386 IPR013083 -
Lal1g0366 557 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 525 IPR031127 GO:0004842|GO:0016567
Lal1g0366 557 Pfam Reverse transcriptase-like 173 286 IPR002156 GO:0003676|GO:0004523
Lal1g0366 557 Gene3D - 156 290 IPR036397 GO:0003676
Lal1g0366 557 MobiDBLite consensus disorder prediction 45 64 - -
Lal1g0366 557 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
Lal1g0366 557 SUPERFAMILY RING/U-box 461 524 - -
Lal1g0366 557 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 31 525 - -
Lal1g0366 557 Coils Coil 4 24 - -
Lal1g0366 557 ProSiteProfiles TRIAD supradomain profile. 303 527 IPR044066 -
Lal1g0366 557 SUPERFAMILY RING/U-box 305 387 - -
Lal1g0366 557 Pfam IBR domain, a half RING-finger domain 467 515 IPR002867 -
Lal1g0366 557 Pfam IBR domain, a half RING-finger domain 389 447 IPR002867 -
Lal1g0366 557 Gene3D - 444 556 - -
Lal1g0366 557 ProSiteProfiles Zinc finger RING-type profile. 307 351 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0366 Lal-Chr1 2217679 2222209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0366 154 506 C3H Transcription Factor Family AT2G19610 32.961 9.48e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0366 - - aprc:113858620 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0366 1 2217679 2222209 Lal1g0366 1 2217679 2222209 ECH