LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0354	ATGCTGGAACAGGGTGGTCCAATGAACAATAATGTTAGGAAAGGAGATTTTTCAGAACAAGATCATATGTTATTTGACAGAAAGGGACCCAATCATGGAGTAGTTAATGGAAGGTTAGGTTCTGGAGCATCAACTGAAGATGACACAAGATCTAACAAGGCAGTTGAAATCCACCAGAGCTTTCAGATTTCGCAACAACCACCTAAAGGTCGAGTCATAGGCTGGGAGAGATTTCTCCCTGTGAGATCAATAAAAGTTCTATTGGTGGAAGATGATGATTCAACACGCCATATCGTGTGTGCTCTGTTACGAAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGACAGCCCTAGGAGATCCTGGAAATCACATTGATCTCGTCTTGACAGAGGTAGCAATGCCTATTTTATCTGGAATAGGTCTTTTGTTGAAGATTATGAACCATAGAACTCTGAAGAACATCCCTGTGATTATGATGTCATCTCATGATGCTATGGGTATAGTCTTTAAATGTTTGTCAAAAGGCGCAGCCGATTTTTTAGTGAAACCTATTCGAAGGAATGAACTTAAAAACCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGCGGTAGTGTGAGTGGGAGTGAAAGTGGAACATACGCCCGAAAATCTTCAAAGTCGAGAAGTAATGATGCACCTCAGAACAGTAGTGATAGCTGTGACGAGAATGACCTTGGAAACAGAAGTGTTCAAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAGTGTGTAGCTCAAGTTGGCAGCCCTCATCCAGCTTCACCTGATAAACAATTTGTTGAAGCCACTGACAGCACGTGTGCCCAAGTGATACATACTAAGCCTGAAAAACTTAGTAGTAGGTGGGCGCATGCGACAGAAAAGGAGTGCCATGAGCTGATTGATGATCATCTTGATAATGCTGCAATGGGTAAAGACTTAGCTATCGGAATATCTTTGAATTTACAAATGGAGCATCCACTTGAGTTATCTAGCAAACCAATTGATATATTTAAGATGTCTGATGTGGATGGTAAGCAGCTTGATAAAGGACACAGTAATCTCTATAAAAAAGGACAACCCGAATACGACATTGAAAAAACCAGGACACAAGAGGATCAGGCTATGAATGCTGTCGATGTTGCTGATAGCAGCAGTCGCCAGGCTGGAAGCAGAGATTTGAACTCTTCATATGGATTTTTTGGTTTCTCACAAACTAAAGCAAGCTGTAACTTTAAACAGTATCCATCCCTTGAACTAACTTTGAAAAGTCTAGAAGACGTAAGAGATGCTAAAAATGACACAGGTGATGCATGCAATGTTTTGAGACATTCAGATCTGTCGGCATTCTCAAGATATAATACCGCATCTTCTGCCAACCAGTCATGGCACAACGATAAAACTGCTTACCTTGACCTTGAGGTCATGGGTTCAAATCTTGGAAACAGCTTCTTCGCTTGCGAGGGTAAGACTGCGTTCGTCTACCCTCCCCAGATCCCACTAACCAATGCTGCTACTAGTGACCAGAGAAGAGTGTTTAGCACTAAACCCCAAACTTTGGCCAAGCCTTATGTTATCTGTTCTTCTTATCAGACTCAAACTGGAAATTTAGGAAGGTGTTCCCCATTAGACAATAGCTCCATGGCACTGAATACAGATACAGCATACGATTTTCCATCTCATTCAAATGGCACTCCTCCAAATCAGCAGTCTAATGGGAGCAACAACATGAATGACATAGCCTCCACCAATACATATCTTAGCACCAAGCCTGAAACTTTTGACCAGGATCCAGAGCCTGTAAGAGGGGTTGGCTTTTTCAATTCTTCTGCACTCCAAACTTTGCAGAACAGTAGTATTTCTCCATCTCAAAAGAAAATTTATGTTCAAGAAGAATCTGCAGAAACCATTAAAGGGCAAGTGCGATGCTCTGAACAAGTACTCCAAGTCAAACACAATTACTTTAAGATTCACCACTATAATCGCATTGCCCACAAAGCTACACCAGATCAACGATCAGATCCTAATGATCCTTTATTGAAAAGCTTGACCACAGCTGCTAAGCAGTGTGTATCATCAAATGCCTTAGGAGGGCCATCAGAAAGTAATTCTGCAGACTTTGGCATGAATGGAAATGCAGTTGAGACTGATCATGACGGTAATAGACAGGATGGAAGCACCAACACATTGGCAATTAGAGCCATAAATGTGAAAAATGGCAATGTGACAGCTGGCATTGGAGTTGGTGGCATTAATGGAAGAAACATAGGGAATGGAGTAGATGAAGGAAGAATTGCATTGAGAGAGGCTGCCTTGACCAAATTTCGTCAGAAGAGAAAGGAAAGATGCTTTGACAAGAAGGTTCGATACCACAACAGGAAAAAACTAGCAGAACAACGGCCACGTATTAGGGGACAATTTGTTCGACATATACTGCCGGGCGAAGAAAAGGATAAACAAGTCAACGTGGTATCTGTGGATAATTCTAGCAATGTTCCACAATAA	2559	0.4177	MLEQGGPMNNNVRKGDFSEQDHMLFDRKGPNHGVVNGRLGSGASTEDDTRSNKAVEIHQSFQISQQPPKGRVIGWERFLPVRSIKVLLVEDDDSTRHIVCALLRNCSYEVTAVSNGLQAWTALGDPGNHIDLVLTEVAMPILSGIGLLLKIMNHRTLKNIPVIMMSSHDAMGIVFKCLSKGAADFLVKPIRRNELKNLWQHVWRRCHSSSGSVSGSESGTYARKSSKSRSNDAPQNSSDSCDENDLGNRSVQDGSDNGSGTQSSWTKCVAQVGSPHPASPDKQFVEATDSTCAQVIHTKPEKLSSRWAHATEKECHELIDDHLDNAAMGKDLAIGISLNLQMEHPLELSSKPIDIFKMSDVDGKQLDKGHSNLYKKGQPEYDIEKTRTQEDQAMNAVDVADSSSRQAGSRDLNSSYGFFGFSQTKASCNFKQYPSLELTLKSLEDVRDAKNDTGDACNVLRHSDLSAFSRYNTASSANQSWHNDKTAYLDLEVMGSNLGNSFFACEGKTAFVYPPQIPLTNAATSDQRRVFSTKPQTLAKPYVICSSYQTQTGNLGRCSPLDNSSMALNTDTAYDFPSHSNGTPPNQQSNGSNNMNDIASTNTYLSTKPETFDQDPEPVRGVGFFNSSALQTLQNSSISPSQKKIYVQEESAETIKGQVRCSEQVLQVKHNYFKIHHYNRIAHKATPDQRSDPNDPLLKSLTTAAKQCVSSNALGGPSESNSADFGMNGNAVETDHDGNRQDGSTNTLAIRAINVKNGNVTAGIGVGGINGRNIGNGVDEGRIALREAALTKFRQKRKERCFDKKVRYHNRKKLAEQRPRIRGQFVRHILPGEEKDKQVNVVSVDNSSNVPQ	852

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0354	852	MobiDBLite	consensus disorder prediction	711	744	-	-
	Lal1g0354	852	SUPERFAMILY	CheY-like	82	208	IPR011006	-
	Lal1g0354	852	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	40	480	IPR045279	GO:0009736
	Lal1g0354	852	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	539	820	IPR045279	GO:0009736
	Lal1g0354	852	SMART	REC_2	84	199	IPR001789	GO:0000160
	Lal1g0354	852	MobiDBLite	consensus disorder prediction	711	728	-	-
	Lal1g0354	852	MobiDBLite	consensus disorder prediction	208	264	-	-
	Lal1g0354	852	Pfam	CCT motif	786	827	IPR010402	GO:0005515
	Lal1g0354	852	ProSiteProfiles	CCT domain profile.	786	828	IPR010402	GO:0005515
	Lal1g0354	852	CDD	psREC_PRR	86	189	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0354	Lal-Chr1	2129974	2137971	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g0354	10	477	Response Regulator Gene Family	AT5G60100	42.324	1.17e-87	283

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Lal1g0354		Response_reg	5.2e-20	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0354	K12129		-	gmx:100803462	654.44

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0354	1	2129974	2137971	Lal1g0354	1	2129974	2137971	ECH
	Lal13g1141	13	8727706	8739135	Lal1g0354	1	2129974	2137971	ECH

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