Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0354 ATGCTGGAACAGGGTGGTCCAATGAACAATAATGTTAGGAAAGGAGATTTTTCAGAACAAGATCATATGTTATTTGACAGAAAGGGACCCAATCATGGAGTAGTTAATGGAAGGTTAGGTTCTGGAGCATCAACTGAAGATGACACAAGATCTAACAAGGCAGTTGAAATCCACCAGAGCTTTCAGATTTCGCAACAACCACCTAAAGGTCGAGTCATAGGCTGGGAGAGATTTCTCCCTGTGAGATCAATAAAAGTTCTATTGGTGGAAGATGATGATTCAACACGCCATATCGTGTGTGCTCTGTTACGAAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGACAGCCCTAGGAGATCCTGGAAATCACATTGATCTCGTCTTGACAGAGGTAGCAATGCCTATTTTATCTGGAATAGGTCTTTTGTTGAAGATTATGAACCATAGAACTCTGAAGAACATCCCTGTGATTATGATGTCATCTCATGATGCTATGGGTATAGTCTTTAAATGTTTGTCAAAAGGCGCAGCCGATTTTTTAGTGAAACCTATTCGAAGGAATGAACTTAAAAACCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGCGGTAGTGTGAGTGGGAGTGAAAGTGGAACATACGCCCGAAAATCTTCAAAGTCGAGAAGTAATGATGCACCTCAGAACAGTAGTGATAGCTGTGACGAGAATGACCTTGGAAACAGAAGTGTTCAAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAGTGTGTAGCTCAAGTTGGCAGCCCTCATCCAGCTTCACCTGATAAACAATTTGTTGAAGCCACTGACAGCACGTGTGCCCAAGTGATACATACTAAGCCTGAAAAACTTAGTAGTAGGTGGGCGCATGCGACAGAAAAGGAGTGCCATGAGCTGATTGATGATCATCTTGATAATGCTGCAATGGGTAAAGACTTAGCTATCGGAATATCTTTGAATTTACAAATGGAGCATCCACTTGAGTTATCTAGCAAACCAATTGATATATTTAAGATGTCTGATGTGGATGGTAAGCAGCTTGATAAAGGACACAGTAATCTCTATAAAAAAGGACAACCCGAATACGACATTGAAAAAACCAGGACACAAGAGGATCAGGCTATGAATGCTGTCGATGTTGCTGATAGCAGCAGTCGCCAGGCTGGAAGCAGAGATTTGAACTCTTCATATGGATTTTTTGGTTTCTCACAAACTAAAGCAAGCTGTAACTTTAAACAGTATCCATCCCTTGAACTAACTTTGAAAAGTCTAGAAGACGTAAGAGATGCTAAAAATGACACAGGTGATGCATGCAATGTTTTGAGACATTCAGATCTGTCGGCATTCTCAAGATATAATACCGCATCTTCTGCCAACCAGTCATGGCACAACGATAAAACTGCTTACCTTGACCTTGAGGTCATGGGTTCAAATCTTGGAAACAGCTTCTTCGCTTGCGAGGGTAAGACTGCGTTCGTCTACCCTCCCCAGATCCCACTAACCAATGCTGCTACTAGTGACCAGAGAAGAGTGTTTAGCACTAAACCCCAAACTTTGGCCAAGCCTTATGTTATCTGTTCTTCTTATCAGACTCAAACTGGAAATTTAGGAAGGTGTTCCCCATTAGACAATAGCTCCATGGCACTGAATACAGATACAGCATACGATTTTCCATCTCATTCAAATGGCACTCCTCCAAATCAGCAGTCTAATGGGAGCAACAACATGAATGACATAGCCTCCACCAATACATATCTTAGCACCAAGCCTGAAACTTTTGACCAGGATCCAGAGCCTGTAAGAGGGGTTGGCTTTTTCAATTCTTCTGCACTCCAAACTTTGCAGAACAGTAGTATTTCTCCATCTCAAAAGAAAATTTATGTTCAAGAAGAATCTGCAGAAACCATTAAAGGGCAAGTGCGATGCTCTGAACAAGTACTCCAAGTCAAACACAATTACTTTAAGATTCACCACTATAATCGCATTGCCCACAAAGCTACACCAGATCAACGATCAGATCCTAATGATCCTTTATTGAAAAGCTTGACCACAGCTGCTAAGCAGTGTGTATCATCAAATGCCTTAGGAGGGCCATCAGAAAGTAATTCTGCAGACTTTGGCATGAATGGAAATGCAGTTGAGACTGATCATGACGGTAATAGACAGGATGGAAGCACCAACACATTGGCAATTAGAGCCATAAATGTGAAAAATGGCAATGTGACAGCTGGCATTGGAGTTGGTGGCATTAATGGAAGAAACATAGGGAATGGAGTAGATGAAGGAAGAATTGCATTGAGAGAGGCTGCCTTGACCAAATTTCGTCAGAAGAGAAAGGAAAGATGCTTTGACAAGAAGGTTCGATACCACAACAGGAAAAAACTAGCAGAACAACGGCCACGTATTAGGGGACAATTTGTTCGACATATACTGCCGGGCGAAGAAAAGGATAAACAAGTCAACGTGGTATCTGTGGATAATTCTAGCAATGTTCCACAATAA 2559 0.4177 MLEQGGPMNNNVRKGDFSEQDHMLFDRKGPNHGVVNGRLGSGASTEDDTRSNKAVEIHQSFQISQQPPKGRVIGWERFLPVRSIKVLLVEDDDSTRHIVCALLRNCSYEVTAVSNGLQAWTALGDPGNHIDLVLTEVAMPILSGIGLLLKIMNHRTLKNIPVIMMSSHDAMGIVFKCLSKGAADFLVKPIRRNELKNLWQHVWRRCHSSSGSVSGSESGTYARKSSKSRSNDAPQNSSDSCDENDLGNRSVQDGSDNGSGTQSSWTKCVAQVGSPHPASPDKQFVEATDSTCAQVIHTKPEKLSSRWAHATEKECHELIDDHLDNAAMGKDLAIGISLNLQMEHPLELSSKPIDIFKMSDVDGKQLDKGHSNLYKKGQPEYDIEKTRTQEDQAMNAVDVADSSSRQAGSRDLNSSYGFFGFSQTKASCNFKQYPSLELTLKSLEDVRDAKNDTGDACNVLRHSDLSAFSRYNTASSANQSWHNDKTAYLDLEVMGSNLGNSFFACEGKTAFVYPPQIPLTNAATSDQRRVFSTKPQTLAKPYVICSSYQTQTGNLGRCSPLDNSSMALNTDTAYDFPSHSNGTPPNQQSNGSNNMNDIASTNTYLSTKPETFDQDPEPVRGVGFFNSSALQTLQNSSISPSQKKIYVQEESAETIKGQVRCSEQVLQVKHNYFKIHHYNRIAHKATPDQRSDPNDPLLKSLTTAAKQCVSSNALGGPSESNSADFGMNGNAVETDHDGNRQDGSTNTLAIRAINVKNGNVTAGIGVGGINGRNIGNGVDEGRIALREAALTKFRQKRKERCFDKKVRYHNRKKLAEQRPRIRGQFVRHILPGEEKDKQVNVVSVDNSSNVPQ 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0354 852 MobiDBLite consensus disorder prediction 711 744 - -
Lal1g0354 852 SUPERFAMILY CheY-like 82 208 IPR011006 -
Lal1g0354 852 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 480 IPR045279 GO:0009736
Lal1g0354 852 PANTHER TWO-COMPONENT RESPONSE REGULATOR 539 820 IPR045279 GO:0009736
Lal1g0354 852 SMART REC_2 84 199 IPR001789 GO:0000160
Lal1g0354 852 MobiDBLite consensus disorder prediction 711 728 - -
Lal1g0354 852 MobiDBLite consensus disorder prediction 208 264 - -
Lal1g0354 852 Pfam CCT motif 786 827 IPR010402 GO:0005515
Lal1g0354 852 ProSiteProfiles CCT domain profile. 786 828 IPR010402 GO:0005515
Lal1g0354 852 CDD psREC_PRR 86 189 - -
Lal1g0354 852 MobiDBLite consensus disorder prediction 569 597 - -
Lal1g0354 852 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 40 480 - -
Lal1g0354 852 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 539 820 - -
Lal1g0354 852 MobiDBLite consensus disorder prediction 26 50 - -
Lal1g0354 852 Gene3D - 83 332 - -
Lal1g0354 852 ProSiteProfiles Response regulatory domain profile. 85 203 IPR001789 GO:0000160
Lal1g0354 852 Pfam Response regulator receiver domain 86 197 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0354 Lal-Chr1 2129974 2137971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0354 10 477 Response Regulator Gene Family AT5G60100 42.324 1.17e-87 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lal1g0354 Response_reg 5.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0354 K12129 - gmx:100803462 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0354 1 2129974 2137971 Lal1g0354 1 2129974 2137971 ECH
Lal13g1141 13 8727706 8739135 Lal1g0354 1 2129974 2137971 ECH