Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0330 ATGGAGATACATAATACTCATAATGAGAATGAGGAAGTGGATATGGGAATGGGAATGGGAATGGGAATAGGAGGGTCGAGTGGGAGTTCAAGGTGGAACCCTACAAAAGAGCAAATAAGCATGTTGGAGAACTTGTATAAGCAGGGAATAAGGACTCCTAGTGCTGAAGAGATACAGCATATAACTGCAAGACTCAGGGTGTATGGTCACATCGAAGGCAAGAATGTCTTCTACTGGTTTCAGAATCACAAGGCCAGGCAAAGACAGAAACAGAAGCAAGAAACTATCGCTTATTTCAATCGCTTTCTTCATAGGCCTCAGCCCATTTTCACTGCACCAATTTGTCCAAATGTTCTCTGCCCTCCATATTGCATGCCACAAGCACAAGGTGAAATGGGCTATTATCATCAACATCCAAAGGTGCTTCTACCCGTAGGTATTAGGAGAAGCCCCAGTGAGAAATTTTTGCCTATGGGAATGTCAAGTACCTGCAATGACCCGCTGGTATATGAAGGCATGCAACCGAGAATCTCTGGTTATAACTTGAGCTACAGTAACCAAGAAACGTTGGATCTCTTTCCTGTGCATCCAACTGGCATTTTGGGAGGAAAAACAACATATGACCAGGTTTCTTCACTGGCTTCAGTTTCTGCTGATAGTTCCACTGATATACCTTTTGGTTCTTCTGATTATGTCAATGAAAATGGAGATTGTTCTGGAGATAAACCCTTCTTTGATTTTTTTACTTTTGGGCAAGGGTCTCAAGTGAGTGATTGA 777 0.4247 MEIHNTHNENEEVDMGMGMGMGIGGSSGSSRWNPTKEQISMLENLYKQGIRTPSAEEIQHITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHRPQPIFTAPICPNVLCPPYCMPQAQGEMGYYHQHPKVLLPVGIRRSPSEKFLPMGMSSTCNDPLVYEGMQPRISGYNLSYSNQETLDLFPVHPTGILGGKTTYDQVSSLASVSADSSTDIPFGSSDYVNENGDCSGDKPFFDFFTFGQGSQVSD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0330 258 Pfam Homeodomain 30 89 IPR001356 GO:0003677
Lal1g0330 258 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 250 IPR044555 GO:0003700|GO:0099402
Lal1g0330 258 SUPERFAMILY Homeodomain-like 22 96 IPR009057 -
Lal1g0330 258 SMART HOX_1 27 94 IPR001356 GO:0003677
Lal1g0330 258 CDD homeodomain 31 91 IPR001356 GO:0003677
Lal1g0330 258 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 17 250 - -
Lal1g0330 258 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Lal1g0330 258 Gene3D - 31 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0330 Lal-Chr1 1995324 1996604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0330 24 258 Wox Gene Family AT5G59340 41.667 6.50e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal1g0330 Homeodomain 5.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0330 - - pvu:PHAVU_011G064900g 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0330 1 1995324 1996604 Lal1g0330 1 1995324 1996604 ECH
Lal1g0330 1 1995324 1996604 Lal2g0236 2 1382797 1383870 LSH