LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0325	ATGGCAGATGGTGAGGATATTCAGCCACTCGTCTGCGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTTCCTAGTATTGTTGGTCGTCCACGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATATGTTGGTGATGAAGCTCAGTCCAAGAGAGGTATATTGACTTTGAAATATCCCATTGAGCATGGTATTGTTAGTAATTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTGGCTCCAGAAGAGCACCCAGTCCTGCTCACTGAAGCTCCTCTCAACCCAAAGGCTAATCGTGAAAAAATGACCCAAATTATGTTTGAGACCTTCAACACCCCTGCCATGTATGTTGCTATCCAGGCTGTTTTGTCCCTCTATGCCAGTGGTCGTACAACCGGAATTGTTCTGGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTATGAGGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACGGGACCTCACTGATGCCCTCATGAAAATCCTCACAGAACGTGGTTATTCCTTCACTACCACAGCTGAGCGTGAAATTGTAAGGGATGTGAAGGAAAAACTTGCTTATATTGCCCTTGATTATGAGCAAGAGCTTGAAACTTCAAAAACTAGCTCTGCTGTTGAGAAGAGCTATGAACTTCCTGATGGACAGGTCATTACCATCGGTGCCGAGCGGTTCAGATGTCCTGAAGTTCTCTTCCAGCCATCCATGATTGGAATGGAAGCCGTAGGCATTCACGAGACCACATACAATTCAATTATGAAGTGTGATGTCGATATTAGGAAGGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACTATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATATCTGCTTTGGCCCCAAGCAGCATGAAGATTAAGGTGGTTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAAGCTGGTCCTTCAATTGTACACAGGAAATGCTTCTAA	1134	0.4612	MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0325	377	ProSitePatterns	Actins and actin-related proteins signature.	106	118	IPR020902	-
	Lal1g0325	377	SUPERFAMILY	Actin-like ATPase domain	6	155	IPR043129	-
	Lal1g0325	377	ProSitePatterns	Actins signature 2.	358	366	IPR004001	-
	Lal1g0325	377	PANTHER	ACTIN	1	376	IPR004000	-
	Lal1g0325	377	Gene3D	-	10	371	-	-
	Lal1g0325	377	PANTHER	ACTIN-97	1	376	-	-
	Lal1g0325	377	SUPERFAMILY	Actin-like ATPase domain	149	377	IPR043129	-
	Lal1g0325	377	CDD	NBD_sugar-kinase_HSP70_actin	10	183	-	-
	Lal1g0325	377	Gene3D	Actin; Chain A, domain 4	182	273	-	-
	Lal1g0325	377	PRINTS	Actin signature	28	37	IPR004000	-
	Lal1g0325	377	PRINTS	Actin signature	51	62	IPR004000	-
	Lal1g0325	377	PRINTS	Actin signature	63	85	IPR004000	-
	Lal1g0325	377	PRINTS	Actin signature	117	130	IPR004000	-
	Lal1g0325	377	PRINTS	Actin signature	142	161	IPR004000	-
	Lal1g0325	377	PRINTS	Actin signature	238	254	IPR004000	-
	Lal1g0325	377	Pfam	Actin	5	377	IPR004000	-
	Lal1g0325	377	Gene3D	-	140	340	-	-
	Lal1g0325	377	SMART	actin_3	7	377	IPR004000	-
	Lal1g0325	377	ProSitePatterns	Actins signature 1.	55	65	IPR004001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0325	Lal-Chr1	1973499	1976410	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g0325	1	377	Cytoskeleton Gene Families	AT3G12110	96.552	0.0	766

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0325	K10355		-	gmx:100811630	755.747

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0325	1	1973499	1976410	Lal1g0325	1	1973499	1976410	ECH
	Lal1g0325	1	1973499	1976410	Lal25g0146	25	924109	926970	ECH
	Lal1g0325	1	1973499	1976410	Lal2g0229	2	1335338	1338135	LSH
	Lal1g0325	1	1973499	1976410	Lal9g0228	9	1394994	1399328	LSH
	Lal25g0146	25	924109	926970	Lal1g0325	1	1973499	1976410	PCT
	Lal8g0105	8	747128	750555	Lal1g0325	1	1973499	1976410	PCT
	Lal1g0325	1	1973499	1976410	Lal25g0146	25	924109	926970	PCT
	Lal1g0325	1	1973499	1976410	Lal8g0105	8	747128	750555	PCT