LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0323	ATGGGTAACGGCGTTGGAAAACTAACCGTGTGTTTCACCGCTAACGGTGGTCGCCGAAAACAACACGAAATGTCGTTTTCTATAACGGAGCCATTAGACGAGGGTCTGGGTCACTCTTTCTGTTATGTTCGACCCGACCCGACTCGTTTATCATCTTCTAAGGTCCACTCTGAAGAAACGACGACGTTTAGAACAATTTCCGGTGCATCGGTAAGTGCCAACACATCAACGCCACTCTCAACCGCTTTCGTTGATTTATACTCATACGGTTCAATTGATCGAGCCGCGGCTTTTGAATCTTCTACTTCCTTCGCTTCTCTTCCTCTTCAACCAATCCCAAAGGGTTTAATGAACTCTGGTCCTTTCTCCGGTAACTTAACCGGTTCGGGTCCTATTGAGAGAGGGTTTTTATCCGGTCCGATTGAACGTGGGTTCATGTCTAGTCCGATTGAAAAAGATGTTAACAGTTCAGATCAGTTTCAGAGAAGCTTCTCTCATAACGGATTAGGGTTCAAACCTAAAAAACAAAAGGGTCGTTGGATTCGTGTTCTTCAGAGAGCGATTTCAAAGACTCTGTCTCGTGGGCAGAACTCAATTGTAGCACCGATCAAAGGGGTTATGACTGTGAAGGAACAACAAGAATGGATTGTTGCTGCAGGGGAGAAGAATCATAATGAGAATTTGGCAGTGAATAGTTTGGTTTTCAGTAGTGAGGGTAGTTTGGAAGAAGATGAATTGAAGGAAAGTCAGAATCTTCAATGGGCTCAGGGGAAAGCAGGGGAGGATCGTGTCCACGTCGTGGTTTCTGAGGAACACGGTTGGGTTTTCGTCGGGATTTACGATGGTTTCAATGGTCCTGATGCACCTGATTACCTTTTATCCAATTTGTACACCTTTGTTTACAAAGAATTGAAGGGGTTGCTGTGGGATGATAGTTCTGAACAAGTTGCTGTAAATGTGAATCAGAATTTGGAAGTGCAAGATGGTGATGAATGTTCTCACTGTTTTGATAATAACAATCATCCCTGCACAAGCGACGATGCTGCGGAATTTATTGATGGTTGCAAGAGAAAGAAGGTTAAGAGTTGCAATGGTAACTTCAAAGGTGCTGCCAAAAAATGGGAGGAGAATCAGAGAAGGTGGAAGTGTGAATGGGATAGGGAAAGATTAGAGCTTGATAGAAGATTGAAGGAGCAGTTAACTCGATCTAATTCAGCCGAGAAGAATACTAGCTCGGTTAACCATTTAGATGTGTTGGAAGCTCTTTCTAGGGCTTTGAGGAAAACTGAGGAGTCTTATTTGGATGTTGCTGATAAGATGGTGATGGAGAATCCTGAGTTGGCATTGATGGGTTCGTGTGCGCTTGTGATGTTAATGAAGGGAGGAGATGTTTATGTGATGAATGTTGGTGATAGTAGAGCTGTGTTGGCGCAAAAGATGGAGCCTGATTATTGGCTTGGGAAGCTTAGGCAGGACTTGGAGCAGATCAATGAAGAAACCATGAATGATCTTGAATCCTTGGATGATGGTGATAGATCAAACTTGGTTTCTACTTTAAGTGCTCTTCAGCTTACCAAGGATCATAGTACTAGTGTTGAAGAAGAAGTCCAGAGAATAAAAAAGGAACACCCAGATGATCCCTGTGCAGTTGTAAATGATCGTGTTAAGGGTTCTCTGAAGGTTACCCGAGCTTTTGGTGCTGGATTTCTCAAACAGCCCAAGTGGAACAATGCACTTCTGGAGATGTTTAGAATAGACTATGTTGGAACTTCTCCTTACATCAGCTGCCAACCATATCTAAAACACCACCGGTTAGGCCCTAAGGACAAATTTTTGATTCTATGCTCTGATGGGCTCTATCAATACATGTCAAACGAACAAGCGGTTGCTGAAGTTGAACTTTTCATTACATTGCAACCTGAGGGAGACCCCGCTCAGCATTTGGTTGAAGAAGTGTTATTTCGTGCTGCAAACAAAGCAGGTTTGGACTTCCACGAGTTGCTTGAAATTCCACAAGGCGATAGGCGGCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAAGGAATGATATGGAGATCATGTGTATAA	2097	0.432	MGNGVGKLTVCFTANGGRRKQHEMSFSITEPLDEGLGHSFCYVRPDPTRLSSSKVHSEETTTFRTISGASVSANTSTPLSTAFVDLYSYGSIDRAAAFESSTSFASLPLQPIPKGLMNSGPFSGNLTGSGPIERGFLSGPIERGFMSSPIEKDVNSSDQFQRSFSHNGLGFKPKKQKGRWIRVLQRAISKTLSRGQNSIVAPIKGVMTVKEQQEWIVAAGEKNHNENLAVNSLVFSSEGSLEEDELKESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYTFVYKELKGLLWDDSSEQVAVNVNQNLEVQDGDECSHCFDNNNHPCTSDDAAEFIDGCKRKKVKSCNGNFKGAAKKWEENQRRWKCEWDRERLELDRRLKEQLTRSNSAEKNTSSVNHLDVLEALSRALRKTEESYLDVADKMVMENPELALMGSCALVMLMKGGDVYVMNVGDSRAVLAQKMEPDYWLGKLRQDLEQINEETMNDLESLDDGDRSNLVSTLSALQLTKDHSTSVEEEVQRIKKEHPDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGTSPYISCQPYLKHHRLGPKDKFLILCSDGLYQYMSNEQAVAEVELFITLQPEGDPAQHLVEEVLFRAANKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGMIWRSCV	698

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0323	698	ProSiteProfiles	PPM-type phosphatase domain profile.	243	689	IPR001932	-
	Lal1g0323	698	Pfam	Protein phosphatase 2C	409	639	IPR001932	-
	Lal1g0323	698	Coils	Coil	490	510	-	-
	Lal1g0323	698	PANTHER	PROTEIN PHOSPHATASE 2C	20	698	IPR015655	GO:0004722\|GO:0006470
	Lal1g0323	698	PANTHER	-	20	698	-	-
	Lal1g0323	698	CDD	PP2Cc	405	689	IPR001932	-
	Lal1g0323	698	SUPERFAMILY	PP2C-like	258	690	IPR036457	-
	Lal1g0323	698	SMART	PP2C_4	245	687	IPR001932	-
	Lal1g0323	698	Gene3D	-	220	693	IPR036457	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0323	Lal-Chr1	1961635	1964907	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g0323	1	698	PP2C-type Phosphatase Gene Family	AT1G07630	66.806	0.0	905

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0323	-		-	pvu:PHAVU_011G064200g	1076.23

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0323	1	1961635	1964907	Lal1g0323	1	1961635	1964907	ECH
	Lal1g0323	1	1961635	1964907	Lal2g0228	2	1329875	1333123	LSH

Showing 1 to 2 of 2 entries