Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0322 ATGTGGATGCATGTTGAAGCTCGAATTCCAGGGGTTTACTCTGGTGGTGCATGGCAAAGTGCTCATGCTACTTTCTATGGTGGATCTGATGCTTCTGGCACCATGGGAGGGGCGTGTGGGTATGGGAATCTGTATAGCCAAGGGTATGGTGTGAAAACAGCAGCATTGAGCACCGCACTTTTCAACAATGGTCTAGGCTGTGGTGCATGTTTTGAGATAAAGTGTGCAAACGACAGAGAATGGTGTCATTCTGGAAGCCCTTCAATCTTTATTACTGCAACTAACTTTTGTCCTCCAAACGACAATGGTGGGTGGTGCAACCCTCCACGACCACACTTTGATCTTGCCATGCCCATGTTCCTGAAGATTGCTGAATACCGTGCCGGAATTGTCCCTGTTGCATATCGCCGGTGCAGGGGCGTGAAGGGATATCGAACGGGTTGGATGGCATTGAGCAGAAACTGGGGTCAGAACTGGCAATCAAACGCAGTTTTAGTGGGCCAGGCCTTGTCATTCCGTGTAACAGGAAGTGACCGTCGAACTTCTACATCTTGGAACATTGCTCCTCCTAACTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTCAAACTCTAA 618 0.4822 MWMHVEARIPGVYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVKTAALSTALFNNGLGCGACFEIKCANDREWCHSGSPSIFITATNFCPPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRCRGVKGYRTGWMALSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFKL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0322 205 PANTHER EXPANSIN 140 204 - -
Lal1g0322 205 PANTHER EXPANSIN 5 138 - -
Lal1g0322 205 SUPERFAMILY PHL pollen allergen 140 200 IPR036749 -
Lal1g0322 205 Pfam Lytic transglycolase 53 135 IPR009009 -
Lal1g0322 205 Gene3D - 7 139 IPR036908 -
Lal1g0322 205 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 118 200 IPR007117 -
Lal1g0322 205 SUPERFAMILY Barwin-like endoglucanases 17 148 IPR036908 -
Lal1g0322 205 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 137 IPR007112 -
Lal1g0322 205 SMART dpbb_1 53 135 IPR007112 -
Lal1g0322 205 PRINTS Expansin signature 48 62 IPR002963 GO:0009664
Lal1g0322 205 PRINTS Expansin signature 75 86 IPR002963 GO:0009664
Lal1g0322 205 PRINTS Expansin signature 89 99 IPR002963 GO:0009664
Lal1g0322 205 PRINTS Expansin signature 103 120 IPR002963 GO:0009664
Lal1g0322 205 PRINTS Expansin signature 120 133 IPR002963 GO:0009664
Lal1g0322 205 PRINTS Expansin signature 190 205 IPR002963 GO:0009664
Lal1g0322 205 Pfam Expansin C-terminal domain 146 189 IPR007117 -
Lal1g0322 205 PRINTS Expansin/Lol pI family signature 17 32 IPR007118 GO:0005576
Lal1g0322 205 PRINTS Expansin/Lol pI family signature 35 53 IPR007118 GO:0005576
Lal1g0322 205 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Lal1g0322 205 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Lal1g0322 205 PANTHER EXPANSIN-A15 140 204 IPR002963 GO:0009664
Lal1g0322 205 PANTHER EXPANSIN-A15 5 138 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0322 Lal-Chr1 1954767 1956562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0322 1 205 Expansin Gene Family AT2G39700 72.131 6.22e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0322 - - gmx:100809139 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0322 1 1954767 1956562 Lal1g0322 1 1954767 1956562 ECH
Lal1g0322 1 1954767 1956562 Lal6g0282 6 1853604 1855918 ECH
Lal1g0322 1 1954767 1956562 Lal18g1325 18 15713540 15715012 ECH
Lal1g0322 1 1954767 1956562 Lal25g0141 25 886327 890321 ECH
Lal1g2180 1 23798884 23802473 Lal1g0322 1 1954767 1956562 ECH
Lal9g1593 9 18300590 18304522 Lal1g0322 1 1954767 1956562 ECH
Lal2g1842 2 20747588 20750373 Lal1g0322 1 1954767 1956562 ECH
Lal1g0322 1 1954767 1956562 Lal9g0224 9 1379058 1382124 LSH
Lal25g0141 25 886327 890321 Lal1g0322 1 1954767 1956562 PCT
Lal1g0322 1 1954767 1956562 Lal25g0141 25 886327 890321 PCT