Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0304 ATGGGAGCTCGTTGTTCTAAATTCTCTCTCTGCTGGTGGTCTTCTAATATCAAATCCAACCTTCATGGCTTGTCTGATAATGATGATGGGAGCAAGAGTGATAAGGATCCTTTTGCTGGGTTCACTGAGTATACCTTGGATCAACTCAAAGTTGCTACTTCAGGATTTTCACCTGACAACATTGTCTCAGAACATGGTGAGAAGGCTCCTAATGTTGTCTACAAAGGAAGACTTGAAGATAATAGATTGGTTGCTGTGAAGCGTTTCAACAAATCAGCTTGGCCTGATTCTCGCCAATTCATAGATGAAGCAAGAGCTGTGGGGCTATTGAGGAGTGAGCGATTAGCTAATTTGGTTGGGTTTTGCTGTGAAGGAGGAGACAAATTGCTTGTTGCAGAATTCATGCCCAATGAAACTCTCTCTAAACATCTCTTTCACTGGGAGAGCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATCTAGCACAAGCACTTGAATACTGCAGCAGTAAAGGAAGAGCATTGTACCATGATCTTAATGCTTATAGAGTTTTGTTTGATAAGGACGGCAATCCTAGACTATCTTGCTTTGGACTCATGAAAAACAGTAGAGATGGAAGAAGCTATAGTACAAATTTAGCCTTTACTCCTCCAGAATACTTGAGGACAGGAAGAATCACCCCTGAAAGTGTAGTTTACAGTTTTGGCACTCTTTTGCTTGATCTTATGAGTGGAAAGCATATCCCACCCAGTCATGCCCTTGACCTTATACGAGCTAAAAATTTCCAGTTGCTGATGGACTCGGGTTTAGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGTTTCACGTTGTTTACAATTTGAACCCCGTGAGAGACCGAATGCCAAATCGCTTGTGACTGCTCTAACTCCACTTCAGAAAGAAACTACAGTATCATCATATTGTTTAATGGGAATAACAGAAGGAGGTGTATCACCAAAGGAAACAGTTTCCTTGACACCTTTTGGTGAAGCTTGTTCAAGAAGAGATCTGACCGCATTACATGAAATGTTGGATAAGGTGGGATACAAGGATGATGAAGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAAATCAAATACAAGATACACTAAATTTTAAGAAGCAGGGAGATTTTGCTTTTCATGCCATGGACTTCTCTAGGGCCAATGAATGCTACACACAATTCATCGATAGTGGGACAATGGTATCACCAACTGTTTACGCGAGGCGCTGCTTATGCTACATGATGAGTGACATGCCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAGTCTGTATTTCCTACCTGGCCCACAGCATTCTATCTTCAAGCAGTTGCCCTTTTCAGCCTTGGCATGGACAATGATGCACAAGAAAGTCTTAAAGATGGCACAATGCTGGAGACCAGAAAACATAGAAATTGA 1476 0.4194 MGARCSKFSLCWWSSNIKSNLHGLSDNDDGSKSDKDPFAGFTEYTLDQLKVATSGFSPDNIVSEHGEKAPNVVYKGRLEDNRLVAVKRFNKSAWPDSRQFIDEARAVGLLRSERLANLVGFCCEGGDKLLVAEFMPNETLSKHLFHWESQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDKDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVVYSFGTLLLDLMSGKHIPPSHALDLIRAKNFQLLMDSGLEGHFSNDDGTELVRLVSRCLQFEPRERPNAKSLVTALTPLQKETTVSSYCLMGITEGGVSPKETVSLTPFGEACSRRDLTALHEMLDKVGYKDDEDVANELSFQMWTNQIQDTLNFKKQGDFAFHAMDFSRANECYTQFIDSGTMVSPTVYARRCLCYMMSDMPQEALGDAMQAQSVFPTWPTAFYLQAVALFSLGMDNDAQESLKDGTMLETRKHRN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0304 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Lal1g0304 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Lal1g0304 491 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 491 - -
Lal1g0304 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Lal1g0304 491 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0304 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 491 IPR045845 GO:0004672|GO:0009742
Lal1g0304 491 Gene3D Tetratricopeptide repeat domain 384 490 IPR011990 GO:0005515
Lal1g0304 491 SUPERFAMILY Protein kinase-like (PK-like) 36 314 IPR011009 -
Lal1g0304 491 SUPERFAMILY TPR-like 384 480 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0304 Lal-Chr1 1841458 1845470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0304 27 310 Glycoside Hydrolase AT3G07070 33.333 5.70e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lal1g0304 PK_Tyr_Ser-Thr 3.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0304 - - gmx:732542 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0304 1 1841458 1845470 Lal1g0304 1 1841458 1845470 ECH
Lal1g0304 1 1841458 1845470 Lal2g0202 2 1200513 1204917 LSH