Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0303 ATGAGGAAGCCTGATCCATCACCTGGAAACAACAAAGATGACAACAACAACAACAACAAGAAATATAGAAAAGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAGCTACATGTTAAAGAGTGGACAAGGTTGTTGGACCGATGTGGCTAGAAATGCTGGCTTACAAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATCAATTACTTGAGACCTGATCTAAAACGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTCATTGGAAACAGATGGTCTCAAATAGCGGCACGCTTACCTGGACGTACCGACAATGAAATTAAAAACTTTTGGAATTCAACAATAAAGAAACGACTCAAGAACTTCTCCTCTACAACCGAGTCCTCATATGATCCTAACAACAAAGACCTCAATATCAACATTGCAGGGTTTACTTCTACTACACAACATTACCAACATGCTGAATTTATGCCTATACTGAATTCATCATCTCCTTCATCAATGCAAGAGACAGTTCTCAACACCATAATTGACAGGTTGCCTATGCTAGAGCATGGAATAATGAACATGCCAGCTGATGGTGGATTCTTCAATGATACAATTGACAACACCAAAGACTTTTATTTGGAAAATGGGGTGTTTGGGAGTGTAAATTTTGGGTCAGAAGTTGATATGTTTGTTCCTGCCCTAGAGAGTGTCAAAACTACTTCTGACCATAACGTTAAAGTGGAGAATGCATGCAACAACATAGATACTAATAATAGTTACCTTAATAGCTACAATAATAAGATCAGAGGTGAGATTAGAGATGGGGTAGAGAATTTATTTCAAGAAGAGTTAGCTATGGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCCTCCTTCCCCTTTCTCGATTTCTCAAGTTGA 936 0.3985 MRKPDPSPGNNKDDNNNNNKKYRKGLWSPEEDDKLMSYMLKSGQGCWTDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLIGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNFSSTTESSYDPNNKDLNINIAGFTSTTQHYQHAEFMPILNSSSPSSMQETVLNTIIDRLPMLEHGIMNMPADGGFFNDTIDNTKDFYLENGVFGSVNFGSEVDMFVPALESVKTTSDHNVKVENACNNIDTNNSYLNSYNNKIRGEIRDGVENLFQEELAMGEWDLEELMKDVSSFPFLDFSS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0303 311 PANTHER MYB TRANSCRIPTION FACTOR 1 311 - -
Lal1g0303 311 CDD SANT 79 119 IPR001005 -
Lal1g0303 311 Gene3D - 78 146 - -
Lal1g0303 311 PANTHER MYB DOMAIN PROTEIN 55 1 311 - -
Lal1g0303 311 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Lal1g0303 311 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Lal1g0303 311 MobiDBLite consensus disorder prediction 1 26 - -
Lal1g0303 311 SMART sant 23 73 IPR001005 -
Lal1g0303 311 SMART sant 76 124 IPR001005 -
Lal1g0303 311 Gene3D - 24 76 - -
Lal1g0303 311 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Lal1g0303 311 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Lal1g0303 311 CDD SANT 27 71 IPR001005 -
Lal1g0303 311 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Lal1g0303 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Lal1g0303 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0303 Lal-Chr1 1836739 1840125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0303 1 309 MYB Transcription Factor Family AT3G08500 43.137 1.34e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g0303 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0303 K09422 - gmx:100786151 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0303 1 1836739 1840125 Lal1g0303 1 1836739 1840125 ECH
Lal1g0303 1 1836739 1840125 Lal9g0205 9 1278278 1281142 LSH
Lal8g0340 8 2305623 2307775 Lal1g0303 1 1836739 1840125 PCT
Lal1g0303 1 1836739 1840125 Lal8g0340 8 2305623 2307775 PCT