Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal1g0299 | ATGACAGAGGAAGTTCGAACCCTATGGATTGGAGACTTACAATATTGGATTGATGAATCTTATCTTTCTCACTGTTTCTCTCACACTGGTGAAGTTGTTTCCATCAAAATCATTCGCAACAAAATCACTTCCCAACCTGAAGGTTACGGTTTCATCGAATTCATTACCCACGCTGCAGCTGAGCGCGTTCTCGTCACTTACAATGGTACTCAAATGCCAGGAACTGAACTCAATTTCCGTTTAAATTGGGCTTCTTTCGGTGTCGGAGAGCGTCGACCTGACGCGGGTCCTGATCACTCTATTTTCGTTGGTGATCTTGCTCCTGATGTTACTGATTTTCTCCTTCAAGAAACTTTCAGAGCTAATTACCTTTCCGTTCGCGGCGCCAAAGTTGTTACTGATCCTAATACTGGTCGCTCTAAGGGCTATGGTTTTGTTAAATTCTCTGATGAGAATGATAGGAATCGTGCAATGAGTGAAATGAATGGTGTTTATTGTTCTACTAGGCCTATGCGTATTAGTGCTGCTACTCCTAAGAAGACTAATACTTTGCAACATCAATATGCTCCTCCTAAAGCAATATATCCAATTCCAGTGGCATACACTCCTCCAGTGAGTACAGTTCCACCAGATTATGATATTAATAATACTACTGTTTTTGTTGGTAATTTGGATCTTAATGTCACGGAGGAGGAACTGAAGCAAATTTTCCTGCAATTTGGAGATATCCTATCCGTCAAAATTCATGCTGGCAAAGGATTTGGATTTGTTCAATTTGGGACTAGAGCATCTGGTGAAGAAGCCATTCAGAGAATGCAGGGGAAGATGATTGGTCAGCAAGTGGCTCAAATTTCTTGGAGTAGTACCTCTTCAGCTAGACAGGACTTACCTGGTGGCTGGGCGCCTCAGATGGATCCTAGTCAATGGAGTTCCTACTATGGGTATGGACAGGGTTATGACCCCTATGCTTATGGAGCTACTCAGGATCCTTCCTTGTATGCATATGGTGCATATGCTGGTTATGCGCAATACCCACAACAGGTCGAAGGTGCTCAGGACATGTCAGCTATGCCTGTGCCTACAGAGGAGTTGTATGATCCGATGGCGATGCCCGATGTGGATAAGTTAAATTATGCATATCTCTCGGTGCATGCAAATGCCATTTTAGGGCGGTCCCTCTGGCTCAAAACCTCGTCATCTCTGCAGCAAACTTAG | 1215 | 0.4379 | MTEEVRTLWIGDLQYWIDESYLSHCFSHTGEVVSIKIIRNKITSQPEGYGFIEFITHAAAERVLVTYNGTQMPGTELNFRLNWASFGVGERRPDAGPDHSIFVGDLAPDVTDFLLQETFRANYLSVRGAKVVTDPNTGRSKGYGFVKFSDENDRNRAMSEMNGVYCSTRPMRISAATPKKTNTLQHQYAPPKAIYPIPVAYTPPVSTVPPDYDINNTTVFVGNLDLNVTEEELKQIFLQFGDILSVKIHAGKGFGFVQFGTRASGEEAIQRMQGKMIGQQVAQISWSSTSSARQDLPGGWAPQMDPSQWSSYYGYGQGYDPYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSAMPVPTEELYDPMAMPDVDKLNYAYLSVHANAILGRSLWLKTSSSLQQT | 404 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal1g0299 | 404 | Gene3D | - | 206 | 296 | IPR012677 | - | |
Lal1g0299 | 404 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 219 | 280 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 101 | 166 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 77 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED | 2 | 347 | - | - | |
Lal1g0299 | 404 | SUPERFAMILY | RNA-binding domain, RBD | 198 | 318 | IPR035979 | GO:0003676 | |
Lal1g0299 | 404 | CDD | RRM1_SECp43_like | 7 | 87 | - | - | |
Lal1g0299 | 404 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 84 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | Gene3D | - | 5 | 85 | IPR012677 | - | |
Lal1g0299 | 404 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 99 | 178 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | SUPERFAMILY | RNA-binding domain, RBD | 86 | 187 | IPR035979 | GO:0003676 | |
Lal1g0299 | 404 | SMART | rrm1_1 | 7 | 80 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | SMART | rrm1_1 | 218 | 285 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | SMART | rrm1_1 | 100 | 174 | IPR000504 | GO:0003723 | |
Lal1g0299 | 404 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 78 | IPR035979 | GO:0003676 | |
Lal1g0299 | 404 | CDD | RRM2_SECp43_like | 98 | 177 | - | - | |
Lal1g0299 | 404 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 2 | 347 | - | - | |
Lal1g0299 | 404 | Gene3D | - | 87 | 187 | IPR012677 | - | |
Lal1g0299 | 404 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 217 | 289 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal1g0299 | Lal-Chr1 | 1790171 | 1793258 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal1g0299 | 7 | 313 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 26.183 | 3.34e-25 | 106 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal1g0299 | - | - | cam:101496574 | 645.58 |