Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0299 ATGACAGAGGAAGTTCGAACCCTATGGATTGGAGACTTACAATATTGGATTGATGAATCTTATCTTTCTCACTGTTTCTCTCACACTGGTGAAGTTGTTTCCATCAAAATCATTCGCAACAAAATCACTTCCCAACCTGAAGGTTACGGTTTCATCGAATTCATTACCCACGCTGCAGCTGAGCGCGTTCTCGTCACTTACAATGGTACTCAAATGCCAGGAACTGAACTCAATTTCCGTTTAAATTGGGCTTCTTTCGGTGTCGGAGAGCGTCGACCTGACGCGGGTCCTGATCACTCTATTTTCGTTGGTGATCTTGCTCCTGATGTTACTGATTTTCTCCTTCAAGAAACTTTCAGAGCTAATTACCTTTCCGTTCGCGGCGCCAAAGTTGTTACTGATCCTAATACTGGTCGCTCTAAGGGCTATGGTTTTGTTAAATTCTCTGATGAGAATGATAGGAATCGTGCAATGAGTGAAATGAATGGTGTTTATTGTTCTACTAGGCCTATGCGTATTAGTGCTGCTACTCCTAAGAAGACTAATACTTTGCAACATCAATATGCTCCTCCTAAAGCAATATATCCAATTCCAGTGGCATACACTCCTCCAGTGAGTACAGTTCCACCAGATTATGATATTAATAATACTACTGTTTTTGTTGGTAATTTGGATCTTAATGTCACGGAGGAGGAACTGAAGCAAATTTTCCTGCAATTTGGAGATATCCTATCCGTCAAAATTCATGCTGGCAAAGGATTTGGATTTGTTCAATTTGGGACTAGAGCATCTGGTGAAGAAGCCATTCAGAGAATGCAGGGGAAGATGATTGGTCAGCAAGTGGCTCAAATTTCTTGGAGTAGTACCTCTTCAGCTAGACAGGACTTACCTGGTGGCTGGGCGCCTCAGATGGATCCTAGTCAATGGAGTTCCTACTATGGGTATGGACAGGGTTATGACCCCTATGCTTATGGAGCTACTCAGGATCCTTCCTTGTATGCATATGGTGCATATGCTGGTTATGCGCAATACCCACAACAGGTCGAAGGTGCTCAGGACATGTCAGCTATGCCTGTGCCTACAGAGGAGTTGTATGATCCGATGGCGATGCCCGATGTGGATAAGTTAAATTATGCATATCTCTCGGTGCATGCAAATGCCATTTTAGGGCGGTCCCTCTGGCTCAAAACCTCGTCATCTCTGCAGCAAACTTAG 1215 0.4379 MTEEVRTLWIGDLQYWIDESYLSHCFSHTGEVVSIKIIRNKITSQPEGYGFIEFITHAAAERVLVTYNGTQMPGTELNFRLNWASFGVGERRPDAGPDHSIFVGDLAPDVTDFLLQETFRANYLSVRGAKVVTDPNTGRSKGYGFVKFSDENDRNRAMSEMNGVYCSTRPMRISAATPKKTNTLQHQYAPPKAIYPIPVAYTPPVSTVPPDYDINNTTVFVGNLDLNVTEEELKQIFLQFGDILSVKIHAGKGFGFVQFGTRASGEEAIQRMQGKMIGQQVAQISWSSTSSARQDLPGGWAPQMDPSQWSSYYGYGQGYDPYAYGATQDPSLYAYGAYAGYAQYPQQVEGAQDMSAMPVPTEELYDPMAMPDVDKLNYAYLSVHANAILGRSLWLKTSSSLQQT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0299 404 Gene3D - 206 296 IPR012677 -
Lal1g0299 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 280 IPR000504 GO:0003723
Lal1g0299 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 166 IPR000504 GO:0003723
Lal1g0299 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 77 IPR000504 GO:0003723
Lal1g0299 404 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 2 347 - -
Lal1g0299 404 SUPERFAMILY RNA-binding domain, RBD 198 318 IPR035979 GO:0003676
Lal1g0299 404 CDD RRM1_SECp43_like 7 87 - -
Lal1g0299 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Lal1g0299 404 Gene3D - 5 85 IPR012677 -
Lal1g0299 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 178 IPR000504 GO:0003723
Lal1g0299 404 SUPERFAMILY RNA-binding domain, RBD 86 187 IPR035979 GO:0003676
Lal1g0299 404 SMART rrm1_1 7 80 IPR000504 GO:0003723
Lal1g0299 404 SMART rrm1_1 218 285 IPR000504 GO:0003723
Lal1g0299 404 SMART rrm1_1 100 174 IPR000504 GO:0003723
Lal1g0299 404 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
Lal1g0299 404 CDD RRM2_SECp43_like 98 177 - -
Lal1g0299 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 347 - -
Lal1g0299 404 Gene3D - 87 187 IPR012677 -
Lal1g0299 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 289 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0299 Lal-Chr1 1790171 1793258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0299 7 313 Eukaryotic Initiation Factors Gene Family AT1G49760 26.183 3.34e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0299 - - cam:101496574 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0299 1 1790171 1793258 Lal1g0299 1 1790171 1793258 ECH