Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0298 ATGAATTCAAACAACTGGCTTTCCTTCCCTCATTCCCCTCCTCATTCTACCTTGCCAACTCATGATCTTCAAGCTACTCAATATCATCAATTTTCTCTTGGGTTAGTGAATGAGAACATGGATAACCCTTTCCAAAGTCATGTAATGAATCAAACAGATTGGAATCTGATTAATACTCACAGCAGTGATGAAGTTCCAAAAGTTGCAGATTTTCTTGGTGTGAGTAAGTCTGAAAATCAGTCAGATCTTGGCACCTTGAATGAATTTCAGCCAAATGAATCAGAATATGTTCTCCCAAATAACAGTCTGGCTCCCATGCAAAACACAGTGGTGACCACTTCCAACGACTACGAGTATTCGAAAAATGCGAATAATAACTTGCAATCATTGACATTATCTATGGGAAGTGGAAAGGATTCAACATGTGAAAATAGCACTGGCAATAATAGTACACAGATTGCTGAAGCTGCACCGTCTAGAAGAACATCAGATACATTTGGACAGAAAACGTCGATATATCGTGGTGTAACAAGACATAGATGGACGGGTAGGTATGAAGCTCACCTTTGGGACAATAGTTGTAGAAGGGAAGGACAATCAAGGAAAGGTCGTCAAGGTGGATATGACAAAGAAGAAAAAGCCGCTAGGTCTTATGATTTAGCTGCACTGAAGTACTGGGGAACCTCCACCACTACCAATTTCCCTATCAGCAACTATGAGAAGGAAATTGATGAAATGAAGCACATGACAAGACAAGAGTTTGTGGCCTCTATCAGAAGGAAGAGCAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGCGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGAATTGGGAGGGTCGCAGGAAACAAAGATCTATACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTCAGAGGTCTTAATGCGGTGACTAACTTTGACATGAGTCGCTATGATGTGAAAGCCATTCTTGAAAGCAGCACTCTCCCAATAGGAGGTGGTGCTGCTAAACGACTTAAAGAAGCTCAAGCTCTTGAATCTTCAAGGAAGCGTGACCAAGAGATGATTGCACTTGGTTCAAGCTTTCAATATGGAACCTCATCAAGCTCTAGCAGGCTACAACCTTATCCTCTAATGCAGCATTTTGAACAACCTCAACCATTGCTAACCCTACAAAACCATGACTTGTCTCACTTTTCACAAGACCCTTCTACACTTCACCAGAGTTATCTCCAAACACAGCTTCAGTTGCACCAGCAAAGTAGCTCCTCTTACCTTCACCAATCAGCTCAGAATGCTCAATACTATAATAGCTATCTTCAAAATCATCACCCATCTTTGATTCCTGGAATGATGAACATGGGTTCTTCCTCATCCAATTCTATGTTGGAGAATGATAATCACAATGTTGGTGGGTATACAGGGAATGTTAGTGCTGTGGGACCAGGAGAGGAACTTGGAATGGTTAAGGTTGACTATGACATGTCTTCCGGCGGTTATAGCGGTTGGTCGGCGGAGGGGACGGAGTCGATGCAGGCATCAAATGCTGGTAGTGTGTTTACAATGTGGAATGAATGA 1623 0.4245 MNSNNWLSFPHSPPHSTLPTHDLQATQYHQFSLGLVNENMDNPFQSHVMNQTDWNLINTHSSDEVPKVADFLGVSKSENQSDLGTLNEFQPNESEYVLPNNSLAPMQNTVVTTSNDYEYSKNANNNLQSLTLSMGSGKDSTCENSTGNNSTQIAEAAPSRRTSDTFGQKTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARSYDLAALKYWGTSTTTNFPISNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESSTLPIGGGAAKRLKEAQALESSRKRDQEMIALGSSFQYGTSSSSSRLQPYPLMQHFEQPQPLLTLQNHDLSHFSQDPSTLHQSYLQTQLQLHQQSSSSYLHQSAQNAQYYNSYLQNHHPSLIPGMMNMGSSSSNSMLENDNHNVGGYTGNVSAVGPGEELGMVKVDYDMSSGGYSGWSAEGTESMQASNAGSVFTMWNE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0298 540 CDD AP2 171 237 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 538 - -
Lal1g0298 540 Pfam AP2 domain 172 227 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 Pfam AP2 domain 272 321 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 538 - -
Lal1g0298 540 ProSiteProfiles AP2/ERF domain profile. 271 329 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 SUPERFAMILY DNA-binding domain 171 237 IPR016177 GO:0003677
Lal1g0298 540 MobiDBLite consensus disorder prediction 136 165 - -
Lal1g0298 540 SMART rav1_2 271 335 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 SMART rav1_2 172 241 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 PRINTS Ethylene responsive element binding protein signature 311 331 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 Gene3D AP2/ERF domain 271 331 IPR036955 GO:0003700|GO:0006355
Lal1g0298 540 Gene3D AP2/ERF domain 172 237 IPR036955 GO:0003700|GO:0006355
Lal1g0298 540 SUPERFAMILY DNA-binding domain 270 331 IPR016177 GO:0003677
Lal1g0298 540 CDD AP2 270 331 IPR001471 GO:0003700|GO:0006355
Lal1g0298 540 ProSiteProfiles AP2/ERF domain profile. 172 235 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0298 Lal-Chr1 1781481 1786850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0298 1 540 AP2-EREBP Transcription Factor Family AT3G20840 60.067 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lal1g0298 AP2 1.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0298 K09285 - gmx:100788471 770