Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0297 ATGAATTCAAACAACTGGCTTTCCTTCCCACTTTCTCCTACTCATTCTCCATTACCAGCTCATGATCTTCAAGCAACTCAATATCATCAATTTTCTCTTGGTTCTCACTTCTCACTTGTATATTTTGGTTTGTATTTTATAAATCCAAAAGATTGGCATCTGATTAATACTCAAAGCAGTGATGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAGCAGGTCTGAAAATCAGTCAGATCTTCCTTCTATGAATGAAATTCAGCCAAATGAATCAGAATATCTTCTCACCAATGTGCCCACCATGCAAAACACATCGGTGACAACATCTAGCAACTATGACTATGACTATCAAGAATGTGCTAATAGTAACTTGCAATCGTTGACATTATCAATGGGACGTGGTAAGGAATTGAGTTGTGAAAGTGGCGGTGCCAATAATACAAAGACTGTTGAAGCTGCCCCTTCTAGAAGAACTTCGGATACCTTTGGGCAGAGAACATCGATATATCGTGGTGTAACAAGGCATAGATGGACTGGAAGATATGAAGCTCACCTTTGGGACAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTTGCCAAGGTGGATATGACAAAGAAGAGAAAGCCGCTAGGGCTTATGATTTAGTTTCACTGAAGTATTGGGGTATATCCACCACAACCAATTTTCCAATCAGCAACTATGAGAAGGAAATGGATGAAATGAAGCATATGACAAGACAAGAATTTGTGGCCTCTATTAGAAGAAAAAGCAGTGGTTTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACACGGGAGATGGCAAGCAAGAATTGGAAGAGTTGCTGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGAAAGAGGCTGCAGAAGCTTATGACATAGCTGCAATAAAGTTCAGAGGTCTCAAAGCAGTAACTAACTTTGAGATGAATCGTTACGATGCAAAAGCCATTCTTGAAAGCAACACTCTCCCAATCGGAAGTGGGGGTGCTAAACGACTAAAAGAAGCTCAAGCCCTTGAATCTTCAAGGAAACATGATCAGGAAATGATTGCACTTGGACAAAGCTTTCACTATGGAACCTCAAGTTCTATCAGGCTACAACCATATCCTCTAATGCACCAATTTCAACAATCTCCTCAACAATTATTAACCCTACAAAACCATGACATGTCTCACTTCTCTCAAAACCCTTCTTCGCTACATCCGAGTTATCTCCAAACACAGCTTAATTTGCACCCGCAAAGTGGCTCTTCTTACACTCACCAATCAGATCAGAATGCTCAATTCTACAATAGTTACTTTCAGAATCATCACCCATCTTTGCTTCAGGGAATGGTGAACATGGGTTCTTCTTCATCATCATCGTCTTTGATGGAGAATGATAATAACAATGTTGGTGGTTTTATTGGGAATGTTAATGATGTCGGTTCATCAGAAGAACTTGGGTTGGTTAAGGTTGATTATGACATGTCTTTGGGTAGTTACGGCGGCTGGTCGACGGAGAGGACGGAGTCCATGCAGGCATCAACAGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGGTGTGTTTAACATGTGGAATGAATGGCAAAAACAATGA 1653 0.4114 MNSNNWLSFPLSPTHSPLPAHDLQATQYHQFSLGSHFSLVYFGLYFINPKDWHLINTQSSDEVPKVADFLGVSRSENQSDLPSMNEIQPNESEYLLTNVPTMQNTSVTTSSNYDYDYQECANSNLQSLTLSMGRGKELSCESGGANNTKTVEAAPSRRTSDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGCQGGYDKEEKAARAYDLVSLKYWGISTTTNFPISNYEKEMDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEKEAAEAYDIAAIKFRGLKAVTNFEMNRYDAKAILESNTLPIGSGGAKRLKEAQALESSRKHDQEMIALGQSFHYGTSSSIRLQPYPLMHQFQQSPQQLLTLQNHDMSHFSQNPSSLHPSYLQTQLNLHPQSGSSYTHQSDQNAQFYNSYFQNHHPSLLQGMVNMGSSSSSSSLMENDNNNVGGFIGNVNDVGSSEELGLVKVDYDMSLGSYGGWSTERTESMQASTAAAAGGGGGGGVFNMWNEWQKQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0297 550 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 545 - -
Lal1g0297 550 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 SUPERFAMILY DNA-binding domain 168 234 IPR016177 GO:0003677
Lal1g0297 550 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Lal1g0297 550 Gene3D AP2/ERF domain 169 234 IPR036955 GO:0003700|GO:0006355
Lal1g0297 550 ProSiteProfiles AP2/ERF domain profile. 169 232 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 MobiDBLite consensus disorder prediction 140 162 - -
Lal1g0297 550 CDD AP2 267 326 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Lal1g0297 550 Pfam AP2 domain 269 318 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 Pfam AP2 domain 169 224 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 SMART rav1_2 169 238 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 CDD AP2 168 234 IPR001471 GO:0003700|GO:0006355
Lal1g0297 550 MobiDBLite consensus disorder prediction 141 162 - -
Lal1g0297 550 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0297 Lal-Chr1 1774425 1778406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0297 1 546 AP2-EREBP Transcription Factor Family AT3G20840 54.860 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lal1g0297 AP2 1.1e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0297 K09285 - gmx:100788471 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0297 1 1774425 1778406 Lal1g0297 1 1774425 1778406 ECH
Lal1g0297 1 1774425 1778406 Lal9g0197 9 1237157 1240579 LSH