Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0296 ATGGATTCACCTACGCCGGACCTAAACCTGGACAACCTTAAAGCCCTGAAAATACTCGGAAGAGGCGCCATGGGCACCGTGTTCCTTATCCAACACTGCACCACCCGTTTCGCCCTGAAGGTTGTTGACAAAACCTCAATTGATTCGAAACTTGACGCCGAACGCCGTGCCCGTTGGGAAATTCAACTTCTTTCTCAACTCTCTCACCCATTCCTCCCTTCTCTCATTTCTACTTTCGAATCTAACCATTTCCTTGCGTGGGCCCTACCTTATTGCCCTGGTGGTGACCTCAATCTTTTAAGGTATCGCCAAAACGACCGCGTTTTCTCACCACCCGTTATCCGTTTCTATCTCGCTGAAATTCTTTGCGCTCTTCAACATCTTCATTCATTGGGTATCGCTTATCGTGATCTTAAGCCTGAGAATGTTCTTATACAAAGTTCTGGTCACGTGACTCTCACGGATTTTGATCTCTCACGTAAGCTCTCTCCAAAAACTGTTCAAACGGTTATTTCTTCTTCTGCTCCTCCTTTGCCGCTTCCGGAAACTCACCGGAAACATCGCCGGAGCTTCTCCCGGTGGATTCATTTTCATCCTTCCGATTTGAGTTCCCAACGGAACGGGTTGAAGAAGACTAAGTCTGCCCGAGTCAGCCCGGTGAGTCGACGGAAACCGAGTTTCTCGAATGGCGAACGGTCCAACTCGTTCGTCGGGACAGAGGAATACGTCTCGCCGGAGGTAGTCCGCGGCGACGGTCACGAGTTTGCGGTTGATTGGTGGGCTATGGGGATTCTCACGTACGAGATGTTGTACGGTACGACGCCGTTTAAAGGGAAGAATCGCAAGGAAACGTTTCGGAATGTGTTGATGAAACCGCCAGAGTTTGTTGGAAAGCGATCGGAGTTAACGGACTTGATTGAAAAGCTGTTGGAGAAGGATCCGACGAAGCGATTGGGTTACACGCGTGGCGCTACAGAGATCAAGGAGCATGAATTCTTCAGAGGTGTACAATGGGACCTGTTGACGGAGATGGTCCGGCCACCGTTCATTCCGGTAAGGGACGACGGCACCGGCGAACATACAGAGCAGTTATCCGCCTTAAATGGTGGCGTGGACATTAAGCATTACTTTGAGAGCTTGAAATCGCCACCGTCGCTGCCGCCTTCTCCGGTGTCGTCACTGTCTTGCAAGTTTAAGAAGACCTTTTCTCTTTCAGATTTCTGA 1224 0.5 MDSPTPDLNLDNLKALKILGRGAMGTVFLIQHCTTRFALKVVDKTSIDSKLDAERRARWEIQLLSQLSHPFLPSLISTFESNHFLAWALPYCPGGDLNLLRYRQNDRVFSPPVIRFYLAEILCALQHLHSLGIAYRDLKPENVLIQSSGHVTLTDFDLSRKLSPKTVQTVISSSAPPLPLPETHRKHRRSFSRWIHFHPSDLSSQRNGLKKTKSARVSPVSRRKPSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWAMGILTYEMLYGTTPFKGKNRKETFRNVLMKPPEFVGKRSELTDLIEKLLEKDPTKRLGYTRGATEIKEHEFFRGVQWDLLTEMVRPPFIPVRDDGTGEHTEQLSALNGGVDIKHYFESLKSPPSLPPSPVSSLSCKFKKTFSLSDF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0296 407 Gene3D Phosphorylase Kinase; domain 1 13 95 - -
Lal1g0296 407 Gene3D Transferase(Phosphotransferase) domain 1 230 352 - -
Lal1g0296 407 Gene3D Transferase(Phosphotransferase) domain 1 96 170 - -
Lal1g0296 407 SMART serkin_6 13 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0296 407 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 8 382 - -
Lal1g0296 407 Pfam Protein kinase domain 15 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0296 407 Pfam Protein kinase domain 228 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0296 407 MobiDBLite consensus disorder prediction 202 234 - -
Lal1g0296 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Lal1g0296 407 ProSiteProfiles Protein kinase domain profile. 13 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0296 407 SUPERFAMILY Protein kinase-like (PK-like) 10 369 IPR011009 -
Lal1g0296 407 ProSitePatterns Protein kinases ATP-binding region signature. 19 40 IPR017441 GO:0005524
Lal1g0296 407 PANTHER FLIPPASE KINASE 1-RELATED 8 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0296 Lal-Chr1 1767374 1768597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0296 4 384 AGC Kinase Gene Family AT1G51170 61.519 9.65e-166 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lal1g0296 Pkinase 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0296 - K08286 lang:109363243 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0296 1 1767374 1768597 Lal1g0296 1 1767374 1768597 ECH
Lal10g1054 10 17566341 17567486 Lal1g0296 1 1767374 1768597 PCT
Lal1g0296 1 1767374 1768597 Lal10g1054 10 17566341 17567486 PCT