Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0289 ATGGATTCCTCTGATGATATGCACGATGCCAACGACATCGACTCCCTCGATGATGATTTCTACAGCGACGATGCTCCCATCAATTACTACAGCGACTATGATGATGAAGCTGATGATGATTATTTTGACGATGCTGATGATGCTGACCGAATTCACGCTCGTACCCCTGAGCAAAATTTTACCATATTGAAGGAATCAGATATCCAGCAAAGACAGGACGAGGACATCAGTAGAGTTGCAACTGTTCTATCCATATCAAAAGTTTCTGCAAGCATACTACTCCGTCACTACAATTGGAGTGTCAGTAAAGTGCATGATGCTTGGTTTGCTGATGAAGTCCGTGTCCGAAAAGCAGTTGGTTTGTTGGAGCAGCCAGTTGTCCAGTATCCTAATGATGAAGAACTTAAATGTGGCATCTGCTTTGAAAATTATCCTCGTGCTAAAATTCAAATGGCTTCTTGTGGTCATCCCTACTGTATCTCATGCTGGGCAGGATATATTGGCACATCCATTAATGATGGTCCTGGGTGTTTGATGTTGAGATGTCCCGATCCAACTTGTGGTGCTGCTGTTGGTCAAGATATGATTGATCTCATACCATCTGATGATGATAAACATAAATATAACCATTACCTTCTTAGGTCTTATATTGAGGACAATAAGAAGTCCAAGTGGTGTCCCGCCCCAGGTTGTGAGTATGCAGTTACTTTTGATGCTGGTAGTGGAAATTATGACATCTCTTGCCTCTGTTCATATTGCTTTTGTTGGAATTGCACCGAGGAGGCTCACCGTCCAGTGGACTGTGGCACCGTGGCAAAGTGGATTTTGAAGAACAGTGCGGAGTCTGAAAACATGAACTGGATACTTGCTAACTCCAAGCCATGTCCCAAGTGCAAGCGACCTATTGAAAAAAACCAAGGGTGCATGCACATGACATGCACACCACCCTGTAGATTTGAATTTTGCTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAATCGTTATGAATCAGCTAAGCAAGAGGGAGTGTATGATGATTCTGAAAAGAGAAGAGAAATGGCAAAGAATTCACTGGAGAGGTACACACACTATTATGAGCGGTGGGCCAGCAATCAAACTTCAAGACAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGCAACACACAGTGCCAGCCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGTTACAAATTGTCGAGTGTAGGAGAGTGCTAAAATGGACGTATGCATATGGTTACTATGTACCGGACAACGAGCATGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTACATCCATTCATCGATGCTGATGCCCCATCTGGAGAATTTAATGACTTTCGTACAAAGCTAGCTGGATTAACCAGTGTGACTAAGAACTTCTTTGAGAACTTAGTTAGAGCGTTAGAGAATGGTCTATCTGATGTGGATGCTAATGGAGCCGCCTCCATCAAAGCAACAAACTCAAAAAATGGTGCGGGGAGCAGCAAGGGGAGAGGAAGGGGAACTCTGGGAAGCAGCATGTCTGATGATAATCATTGGTTTTGCGAGCAATGTACCTACGCAAATGTCAAATCTGCCACCGCATGTCAGATTTGTAATCATCAGCGTGAATGA 1746 0.4364 MDSSDDMHDANDIDSLDDDFYSDDAPINYYSDYDDEADDDYFDDADDADRIHARTPEQNFTILKESDIQQRQDEDISRVATVLSISKVSASILLRHYNWSVSKVHDAWFADEVRVRKAVGLLEQPVVQYPNDEELKCGICFENYPRAKIQMASCGHPYCISCWAGYIGTSINDGPGCLMLRCPDPTCGAAVGQDMIDLIPSDDDKHKYNHYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDISCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCRFEFCWLCLGAWSDHGERTGGFYACNRYESAKQEGVYDDSEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQTVHIEKLSNTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYVPDNEHAKKQFFEYLQGEAESGLERLHQCAEKELHPFIDADAPSGEFNDFRTKLAGLTSVTKNFFENLVRALENGLSDVDANGAASIKATNSKNGAGSSKGRGRGTLGSSMSDDNHWFCEQCTYANVKSATACQICNHQRE 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0289 581 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Lal1g0289 581 SUPERFAMILY RING/U-box 207 275 - -
Lal1g0289 581 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Lal1g0289 581 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 534 - -
Lal1g0289 581 MobiDBLite consensus disorder prediction 1 38 - -
Lal1g0289 581 Pfam Ariadne domain 355 528 IPR045840 -
Lal1g0289 581 SUPERFAMILY Ran binding protein zinc finger-like 553 580 IPR036443 -
Lal1g0289 581 SUPERFAMILY RING/U-box 131 218 - -
Lal1g0289 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 220 IPR013083 -
Lal1g0289 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 534 IPR031127 GO:0004842|GO:0016567
Lal1g0289 581 MobiDBLite consensus disorder prediction 528 549 - -
Lal1g0289 581 SMART ibrneu5 206 268 IPR002867 -
Lal1g0289 581 SMART ibrneu5 272 342 IPR002867 -
Lal1g0289 581 ProSitePatterns Zinc finger RanBP2-type signature. 557 576 IPR001876 -
Lal1g0289 581 Pfam IBR domain, a half RING-finger domain 207 268 IPR002867 -
Lal1g0289 581 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 -
Lal1g0289 581 SUPERFAMILY RING/U-box 287 335 - -
Lal1g0289 581 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Lal1g0289 581 Gene3D - 264 519 - -
Lal1g0289 581 ProSiteProfiles Zinc finger RanBP2 type profile. 553 581 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0289 Lal-Chr1 1713368 1719496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0289 17 580 ARIADNE family AT1G65430 70.246 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0289 K11968 - gmx:100810427 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0289 1 1713368 1719496 Lal2g0183 2 1076480 1082755 LSH
Lal1g0289 1 1713368 1719496 Lal9g0186 9 1154214 1160587 LSH
Lal25g0376 25 2509417 2521006 Lal1g0289 1 1713368 1719496 PCT
Lal10g1061 10 17628152 17636128 Lal1g0289 1 1713368 1719496 PCT
Lal8g0315 8 2111474 2118469 Lal1g0289 1 1713368 1719496 PCT
Lal1g0289 1 1713368 1719496 Lal25g0376 25 2509417 2521006 PCT
Lal1g0289 1 1713368 1719496 Lal10g1061 10 17628152 17636128 PCT
Lal1g0289 1 1713368 1719496 Lal8g0315 8 2111474 2118469 PCT