Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0288 ATGGGAAGTTGCATTTCATCACAAGGAAAAACATACCCACGTAAAAGGTCTAAGGAACCTATCACCAAACCTTCTCCAACAAGAAACATCCAACATGATCATTATAATTATGACCCACCAACACCAACCACCGCACGCCGCTCATCGGTGGCCTCAATGCGGCCACCGATGACCGTGATAATGAGCCCTTCCCCGGGTAATATATTTGACAAGTATCAATTAGGGAAGGAGCTAGGGAGAGGAGAATTTGGTGTGACACATAGGTGTGTTGATTTGAAGAGTGGTGAGGCTTTTGCATGTAAGAAGATAGCTAAGACAAAGTTGAGAACAGAGATTGATATTGCTGATGTGAGGAGGGAGGTGCAGATCATGAGGCATTTGCCTAAACATCCTAATATTGTGTCATTTAGAGAGGCTTATGAGGATAGAGATGCTGTTTATCTTGTTATGGAGCTTTGTGAAGGTGGTGAGCTTTTTGATAGGATTGTTGCAAAGGGACATTATACCGAACGTGCTGCTGCTAATGTTACCAAGACAATACTTGAAGTTTGTAAGGTGTGCCATGACGAGGGCGTAATACACAGGGACTTAAAACCTGAAAATTTCTTATTTGCAGATGGAAGTGAGACTAGTCCCTTAAAGGCAATTGATTTTGGACTTTCCACCTTCTATGAAGCTGGGGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCAGAGGTCTTAAGACGTAACTATGGACTCGAAGTCGATGTGTGGAGCACAGGCGTTATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGGCATTGCAGAAACTGAAGAAGGAATTGCACAGGCCATCATCCGCGGTAATTTAGATTTCACAAGAGATCCATGGCCTAAAGTTTCAGAAGAAGCAAAAGACATAGTTAAGCGTATGCTTGATCCAAATCCACACACCCGTGTAACAGTTCAAGAAGTTCTTGAACATTCTTGGATACAAAACAAGGATCATGCACGAAATATTTCTCTTGGAGACCAAGTAAGAATGAGAATCAAGACATTCTCCTTGATGAACAGATTCAAAAAGAAGGCTCTAAGAGTGGTGGCTGATAACCTGCCAGATGAGCAAGTTCAAGGTATAAGGAAAATGTTTGATATGATGGACAAGGACAAAAATGGGCACTTAACATTTGAAGAGCTCAAAGATGGCCTTGCAACTATCGGAGACGCTCTTCCTGATCCCGATGTTCAGATGTTAATGGAGGCTGCAGATATTGATGGAAATGGCACCCTGAATTGTGAAGAGTTTATAACAATGAGTGTTCATCTGAGAAAGATTGAAAGTGATGAGCATCTCACTGAAGCATTCAATTACTTTGACAAGAATCAAAATGGGTATATTGAGCTTGAGGAGTTGAAAGATGCCTTATCAGATGATGGTCCGGGACTTAATGACGACGAGGTGATCAGAGACATTCTAAATGATGTGGACTTGGATAAGGATGGTAAAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGTCAGGAGGAGATTGGAAAATGGCTTCTCGGCAGTATTCAAGAGCAATGCTAAATGCATTAAGCATCAAGATGTTTAAAGATAACTCTATAACTGCAGCTAACTAA 1650 0.4127 MGSCISSQGKTYPRKRSKEPITKPSPTRNIQHDHYNYDPPTPTTARRSSVASMRPPMTVIMSPSPGNIFDKYQLGKELGRGEFGVTHRCVDLKSGEAFACKKIAKTKLRTEIDIADVRREVQIMRHLPKHPNIVSFREAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILEVCKVCHDEGVIHRDLKPENFLFADGSETSPLKAIDFGLSTFYEAGERFSEIVGSPYYMAPEVLRRNYGLEVDVWSTGVILYILLCGVPPFWAGIAETEEGIAQAIIRGNLDFTRDPWPKVSEEAKDIVKRMLDPNPHTRVTVQEVLEHSWIQNKDHARNISLGDQVRMRIKTFSLMNRFKKKALRVVADNLPDEQVQGIRKMFDMMDKDKNGHLTFEELKDGLATIGDALPDPDVQMLMEAADIDGNGTLNCEEFITMSVHLRKIESDEHLTEAFNYFDKNQNGYIELEELKDALSDDGPGLNDDEVIRDILNDVDLDKDGKISFEEFKAMMKSGGDWKMASRQYSRAMLNALSIKMFKDNSITAAN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0288 549 Gene3D Transferase(Phosphotransferase) domain 1 158 342 - -
Lal1g0288 549 MobiDBLite consensus disorder prediction 1 52 - -
Lal1g0288 549 Gene3D - 343 517 - -
Lal1g0288 549 Pfam EF-hand domain pair 381 440 IPR002048 GO:0005509
Lal1g0288 549 Pfam EF-hand domain pair 451 515 IPR002048 GO:0005509
Lal1g0288 549 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Lal1g0288 549 SUPERFAMILY EF-hand 363 516 IPR011992 -
Lal1g0288 549 CDD EFh 452 515 IPR002048 GO:0005509
Lal1g0288 549 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Lal1g0288 549 SMART efh_1 489 517 IPR002048 GO:0005509
Lal1g0288 549 SMART efh_1 380 408 IPR002048 GO:0005509
Lal1g0288 549 SMART efh_1 452 480 IPR002048 GO:0005509
Lal1g0288 549 SMART efh_1 416 444 IPR002048 GO:0005509
Lal1g0288 549 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Lal1g0288 549 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Lal1g0288 549 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Lal1g0288 549 SUPERFAMILY Protein kinase-like (PK-like) 53 345 IPR011009 -
Lal1g0288 549 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Lal1g0288 549 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Lal1g0288 549 ProSiteProfiles Protein kinase domain profile. 72 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0288 549 CDD STKc_CAMK 71 332 - -
Lal1g0288 549 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Lal1g0288 549 CDD EFh 381 440 IPR002048 GO:0005509
Lal1g0288 549 Pfam Protein kinase domain 72 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0288 549 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Lal1g0288 549 MobiDBLite consensus disorder prediction 23 51 - -
Lal1g0288 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Lal1g0288 549 SMART serkin_6 72 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0288 549 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 530 - -
Lal1g0288 549 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 52 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0288 Lal-Chr1 1708852 1712825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0288 1 543 EF-hand Containing Proteins AT2G31500 66.422 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal1g0288 Pkinase 5.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0288 K13412 - gmx:100818929 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0288 1 1708852 1712825 Lal2g0182 2 1072674 1075713 LSH
Lal1g0288 1 1708852 1712825 Lal9g0185 9 1150841 1153613 LSH