Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0284 ATGTATCCAAAACGGTCTAGCCAAGATGGCCCTGGTTCAGGGAAGGTGCGCACAAGTGATAGGATCAGGACTCGGCCAAACATTTATGGTCGACCATTCTCGTACTACAACTCCAATATTAGGCGCACCAGGAAAAGCAAGACTAAGACAAGGACAGCAGCTTCACAGATTGCCAAGATGTTGCGTCCAGGGAACCACAGAGCGCAAGATTCAAATACTAATAAAGCCTCCTTGCTTGCGAGGGTAAGGCGACATACATTTATCCACCTAGACCCACTAGATGGGAGCCTTGTGCACATTTGGCCGTTGTTGCTTAGTGATCACGAGTTCAAATCCTGGAAATCGCCTTTCCGTTTGCGGGGTAAGTCTGGCTCTACCATCCTTCGTCGTTCAACCAGGAAGAGAATGATTAACAAACACCTTGAAGATTTCACTGACAGCTCTGGACCCGAGGATGATGACTTAATGAGACCCCAATATCGAACATTAAGAAACCGGGTTAGAAATAGTGTCACCCGGGATGGTTTGATGTCTACGAAGCACAAAAGAACAGTGCAGACTAAACCAGAACCACGACGTGAAGGCCTACGACCTCGCCGTTCCAGGGCTGCTGCAAGAGAACAATTGATTTTAGAATCAGATGATGAGCAAGACCTTTCAGAAGACAAGGGTGAACAAGATGAATCCGAAAATGGAAATGATGTTGAAGAAAATGATGCAGATGATGGTCAAAATGAGATTGAAGGGGATGGTGAGGGAGAAGATGGTGAGGATGAAGGTGATGAGGATGGTGATGATGAAGAGGGTGAAGAAGAGCAAGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCAGATGTCCGCAGGTTTTCTATGGAGGAGGGGAAGGCCCGACCGAGATCCCCTCGAAGAGTGTTACATCAAGGTATGGGAACCAAGGTCAGCAGGGATGTTAGGAAGGGTTCAACACGAGTTCATAAGCGTCACCGCTTAGCAAGGCCTGAAGATTCGGATGACTCTCTTCTTGTGGATGAGCTGGATCAAGGCCCTGCTATTCCATGGGGTCGTAGTGGTAGCAGATCTGGTCCTCCTTTGGCTTTTGGGGGCTTAGACATGCATGGATCAACATCTTGGGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATTCTTTTGCTACTCTGACATCTGGAATTCAGACTGCAGGACCAAGCTCTAAAGGAGGGGCAGATATTCAACCCTTACAGGTTGATGACAGTGTCAGTTTTTCTGATATAGGCGGGCTCTCTGAATATGTTGATGCTTTAAAGGAAATGGTTTTCTTTCCATTACTATATCCAGATTTCTTTGCAAGTTATCACATTACTCCTCCTAGGGGGGTGTTATTATGTGGCCCCCCTGGGACTGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCCGCTTCTAAAGCTGGTCAGAAGGTTAGTTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAAGAAGCTCAAAGAAATCAACCTTCTATTATTTTTTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAGGAGCAAATCCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATCGATGCTATTGACGGAGCCTTAAGACGCCCTGGTAGATTTGATCGTGAATTCAACTTTTCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGATATACATACTCGTAAGTGGATGCATCCTCCTTCAAAGGATCTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTAAAGGCTCTCTGTACAGAAGCTGCCATTCGTGCTTTTCGTCAAAAATATCCTCAGGTTTATACAAGTGATGACAAATTTCTCATAGATGTTGATTCAGTTAGAGTACATAAGTATCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCACATCGGGGAGCTATTGTTCACTCTAGGCCATTGTCTCTAGTTGTTCAACCATGTCTTCAGAGGCATCTAGAGAAAGCCATGAATATTATATCTGATATTTTCCCTTCAGCTACTCTTGCATCAGAGTTGACCAAACTTTCAATGCTTTCTTATGGATCTGCAATTCCACTTGTCTATCGGCCTAGGCTTCTACTTTGCGGTGGTGAAGGTACTGGACTGGATCATCTGGGGCCTGCGGTCTTGCATGAACTGGAAAAATTTCCTGTACATTCATTAGGACTTCCTTCTCTTCTGGCGGATCCCAGTGCAAAGACACCGGAGGAGGCATTGGTGCACATATTTGGTGAAGCTCGAAGAACAACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACTTTACTAGAAGAATTGCCATCTGACTTACCTATCCTACTACTTGGGACATCCTCAGTTGCACTTGCGGAACTTGAGGAAATACCACCTTCAGTTTTCCCTCATCGATCAGTATATCAAGTGATCTTGCCATCAACCAAAGATAGGACTTTGTTTTTTGATCGTATGATAGAAGCTGTTGTGTCAGTCCTGCTAGAGGGATTGAGCAAGAAATCCCAGGATACAGGATGCATTCCAGAACTTCCCAAGGCACCAAAATTAGCTAGTGGTCCAAAGGTATCTGAGCTAAAAGCGAAGGTGGAGGCTGAACAACATGCACTTCGAAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATTTTGTATGACAAGCGATTTAATGCCTTCCATTATCCAGTCTCAGATGAAGATGCACCTAATTATCGCTTGATTATACAAAACCCAATGGACATGGCTACCGTGCTGCAGCATGTTGACAATGGTCACTATATTACAAGTGCAGCATTCCTTCAGGACATTGATCTTATTGTTTCCAATGCTAAGGCATGTTTCCTTCGCCTTAGTTTTTTATATTTTTGGCTTACAATGGAGATGACTACAATGGCGCTAGGATTGTCAGTAGAGCTTGTGCATGGGATGCTGTCACAGATGGATCCAGCACTGGTAGCATACTGTGATAAGATTGCTAGCCAAGGTGGCCCAGCTAATTTGCCTGATGAATTAAGGGATTCTACATTCCCTGCTACTCCTGTTGTACAGCTAGGTACTGCTACTAGAATGAGTGCTCGACTTCGCAATGTCCAACCAGATGTTAATGTGGACCGGAGTTATGAAGCATTGAAGCGGACTAAAAAGAACAGTGATGTTGTACAAGCAGAAGATAAGTCACAAGAAGATTCTGTACTGTTAAAGTCTGCGGATGAGCACCAGGCTAATAACATAGATTCTGAAAGGATTGAACCTGTGTTAGTTGATGGAAATTCGCATGGAATTTGTACAAGTAGCCAATCTGATGGTGGCAACCTTGAAGATGTCATAATGCAAGATGTTGAATTTTCAAGGCAAGTGGATTGTGTGAAGGAGCTTTTTGTTAAGAATAGTGAGAATCACAACATTCCACAACTTGAAAGGCTCTACATGAGAGTTATGAAGGGCGTGTTTGAAGTCAAAGGTAAGGGAAAGAGTGGTGATCTTAAGCATTTGGTGTTGGGGTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA 3762 0.4399 MYPKRSSQDGPGSGKVRTSDRIRTRPNIYGRPFSYYNSNIRRTRKSKTKTRTAASQIAKMLRPGNHRAQDSNTNKASLLARVRRHTFIHLDPLDGSLVHIWPLLLSDHEFKSWKSPFRLRGKSGSTILRRSTRKRMINKHLEDFTDSSGPEDDDLMRPQYRTLRNRVRNSVTRDGLMSTKHKRTVQTKPEPRREGLRPRRSRAAAREQLILESDDEQDLSEDKGEQDESENGNDVEENDADDGQNEIEGDGEGEDGEDEGDEDGDDEEGEEEQDGRRRYDLRNRADVRRFSMEEGKARPRSPRRVLHQGMGTKVSRDVRKGSTRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRSGSRSGPPLAFGGLDMHGSTSWGLNLAASGWGHQGDSFATLTSGIQTAGPSSKGGADIQPLQVDDSVSFSDIGGLSEYVDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTRKWMHPPSKDLKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFLIDVDSVRVHKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMNIISDIFPSATLASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLADPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALAELEEIPPSVFPHRSVYQVILPSTKDRTLFFDRMIEAVVSVLLEGLSKKSQDTGCIPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRLIIQNPMDMATVLQHVDNGHYITSAAFLQDIDLIVSNAKACFLRLSFLYFWLTMEMTTMALGLSVELVHGMLSQMDPALVAYCDKIASQGGPANLPDELRDSTFPATPVVQLGTATRMSARLRNVQPDVNVDRSYEALKRTKKNSDVVQAEDKSQEDSVLLKSADEHQANNIDSERIEPVLVDGNSHGICTSSQSDGGNLEDVIMQDVEFSRQVDCVKELFVKNSENHNIPQLERLYMRVMKGVFEVKGKGKSGDLKHLVLGFLLKFVEDDANF 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0284 1253 Pfam ATPase family associated with various cellular activities (AAA) 463 597 IPR003959 GO:0005524|GO:0016887
Lal1g0284 1253 Gene3D - 935 1035 IPR036427 GO:0005515
Lal1g0284 1253 MobiDBLite consensus disorder prediction 214 270 - -
Lal1g0284 1253 Pfam AAA+ lid domain 625 662 IPR041569 -
Lal1g0284 1253 ProSiteProfiles Bromodomain profile. 966 1028 IPR001487 GO:0005515
Lal1g0284 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 959 IPR027417 -
Lal1g0284 1253 ProSitePatterns AAA-protein family signature. 568 586 IPR003960 GO:0005524|GO:0016887
Lal1g0284 1253 PANTHER BNAC08G44480D PROTEIN 1 85 - -
Lal1g0284 1253 PANTHER BNAC08G44480D PROTEIN 125 1248 - -
Lal1g0284 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 683 IPR027417 -
Lal1g0284 1253 CDD AAA 743 865 - -
Lal1g0284 1253 MobiDBLite consensus disorder prediction 140 159 - -
Lal1g0284 1253 MobiDBLite consensus disorder prediction 175 213 - -
Lal1g0284 1253 Gene3D - 599 684 - -
Lal1g0284 1253 SMART bromo_6 943 1046 IPR001487 GO:0005515
Lal1g0284 1253 Pfam Bromodomain 956 1021 IPR001487 GO:0005515
Lal1g0284 1253 MobiDBLite consensus disorder prediction 1 24 - -
Lal1g0284 1253 SUPERFAMILY Bromodomain 941 1021 IPR036427 GO:0005515
Lal1g0284 1253 MobiDBLite consensus disorder prediction 165 338 - -
Lal1g0284 1253 CDD AAA 459 598 - -
Lal1g0284 1253 PANTHER AAA DOMAIN-CONTAINING 1 85 IPR045199 -
Lal1g0284 1253 PANTHER AAA DOMAIN-CONTAINING 125 1248 IPR045199 -
Lal1g0284 1253 Gene3D - 421 691 IPR027417 -
Lal1g0284 1253 SMART AAA_5 459 600 IPR003593 -
Lal1g0284 1253 MobiDBLite consensus disorder prediction 271 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0284 Lal-Chr1 1683201 1692802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0284 409 663 Calmodulin-binding Proteins AT3G56690 37.066 6.28e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0284 K22531 - gmx:100787765 1870.51