Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0280 ATGGGAAAGAAAAAGAAGAAGAAAGGAGGAGGGAGGAGTAGCGGAAGAACTCCTTCAAAATCCAATGATTATGTTTCTCCATTCACCGTTCATGATGATAATGATCTTTCCGAAGAGATTACTGCTTTATGCGCTATTTTTGAAGATGACTGCAACATAGTTAGTGGATCTCAAATTGCTATTAAGCTCAGACCTTACTTTCACGATATGGGTTTTTACGATTCTCATGTTTCTGCTCTTCTTCTTGTCAGGTTCTTACCTGGTTATCCTTTCAAGTGCCCTAAGCTTCATATTACTCCTGAGAATGGCTTATCTCAATCTCATGCTGATCAACTTTTGTCTCTTCTCCTTGATCAGGCTAATTTGAACGCTAGGGAGGGACGAGTCATGATCTTTAATTTGGTTGAGGCAGCTCAAGAATTTCTATCTGGAATCCAGCCTATTGCCAAATCAACTGATTCTAAGGTTTTGCACTCAGCTAATGAAGGCAATGAAGAATTGTTACTCAAGGATATTGCATCTTCAAATAGGAATAGATCTTTTGTTTATGGTTTTATAGACCTTTTTAGTGGCTATGGAGAGTCATGGAATTGGGGTTTTGGAATCGACGAATCTCCTGGAAAAATTTCTCCCCTTCCTCCCTCTAAGTTAGATGCCTCTAAACGCAGTCTTGAGGCCTGGGAAAAGAAATCTGGTAGTAAGGAAAAGCTGTCAATACTGCAAGAACTCCCTGCCAAATTAGATACCGTTGGAGAAGTTAGTGAAGATGACAACAACAGCACATCCTTGACTAATTCAAGTAGACATCTGGTAGAGGATTTAGTAGAGAACGACAATGAAGATTCTATTGGTGATGATTATGCAACAGAAGATAACGAAGATATGTATGCAAGTGAGTCTTCATCAACTGCCTCCTTGACTCATCACCAAGCATCTCAAACAGTTGAAAAGGATCTAATGATGGTTCACCTGCTTCGTCTTTCTTGTGCTTCTAAAGGAACACTGTCTGAATCTTTGCCACAAGTTGCAACAGAGCTTTACAATTTAGGGTTCCTTTCTGACTGGGCACATGACATGGCATCTAAATCGCCTTCCATTTTCAACAAAACCTTTGATCGTCTTTTCCAGAAACACCTGGCTTCATCAGGAGTATCTCAATTTTGGAAGCCTTCTTCCGATTTTGGTGGCTCAAATACAGTTCCACATAGTTCTCGATACCTGAATGACTTCGAAGAAATACGGCCTCTTGGTCATGGTGGTTTTGGCCATGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAGTATGCAGTGAAGAAAATTCGCCTCAAGGACAAAAGCATGCCTGAAAGAATATTGAGGGAAGTAGCAACACTTTCTCGTTTGCAGCACCAACACGTTGTTCGGTATTATCAGGCGTGGTTTGAAACTGGAGTTGTTGATTCTTATGGTGATGCAGCTTGGGGTTCAACAACTCCACTGAGCTCTACTTTCAGCTATAAAGCTGCCAGCACCACTGATGCCTTAGGACATGAGATTCAACTCGAATCAACATACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTACGCCAGATGTTTGAATCGTATAATCACTTTGACAAAGAACTGGCTTGGCATTTGTTTCGTCAAATAGTGGAAGGCCTGGCACACATACATGGACAAGGAATAATTCATCGGGACTTGACACCAAATAATATATTCTTTGATGCTCGCAATGACATTAAGATCGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATATGGGCCACCCTGTTGATACGACTTCTCTCTCCATTGATGGTACTGGGCAAGTTGGGACTTATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTCAGGGGTGGTTTTCTTTGAGCTTTGGCACCCATTCCAGACAGCAATGGAGCGACATGTTGTTTTATCTGATCTGAAGCAGAAAGGAGAACTGCCTCCTGCGTGGGTTGCTGAGTTTCCAGAACAGGAATCCTTGCTGCGAAAGTTAATGTCTCCAGGTCCTTCTGACCGTCCTTCTGCCACAGAACTTCTACATAATGCATTTCCTCCACGGATGGAGTCTGAATTATTAGATGATATCCTACGGACAATGCAGAAATCAGAGGATAGAAGCATATATGATAAAGTTTTAAATGCTATCTTTGACGAAGAGATGTTAAGCACTAAGCACACTCGTCAGGCTGGTGGATTGGGGTCAGTGGGAGATAACAGTTCATCCATTCATTGCACAGAATTTGAAACTGAGGTTAGAGATTATGTTGTAGATGTCAACAAGGAAATTTTCAGACAGCATTGTGCAAAGCGACTAGAAATATTAACAGTGCACTTATTGGATGATTCCCCAGCGTTTAATAGAAATGCAGTTAAACTTCTGACCCACGGGGGAGATATGCTTGAACTTTGCCATGAGTTGCGCTTGCCTTTTGTGAACTGGATTATATCTAATCAGAAATCCTCATTCAAACGATATGAGATATCATGTGTCTACAGAAGAGCAGTTGGACATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGACATAATTGGTGGTACATCAGCTTTGACAGAGGCAGAAGTCATAAAGGTGACAAGGGACATAGTCACTTGCTTTTTCCATGCAGATTCATGTGACATTCATCTAAACCATGGTGCCCTACTGGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACATAGACTTAAAGTAGCGGAGCTTCTTTCAATGATGAGTTCTTTGCGTCCACAATCCTCTGAAAGGAAATCGAAATGGGTAGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAAGCTATGGTAAATAGGTTGCAGACAGTAGGTCTAAGATTCTGTGGAGCTGCAGATCTGGCACTTCCCAGATTAAGAGGAGCTCTTCCATCTGATAAACGGACATGCAAGGCACTTGATGAATTGTCTGAGCTCTTGAGTTTTTTGAGAATTTGGAGAATTGACAATAATGTCTACGTAGATGCATTAATGCCACCAACTGAAAGTTATCATCGAGATTTATTTTTTCAGGTATACCTAAGGAAGGAGAACAGTCCTGGATCACTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGGTATGACTATTTGCTTAATCAGTTGTGGAGTCGTGACCATAAAGGAAATCCTCCCAGCGGTGTGGGGACTAGCCTTGCACTAGAGACAGTAATTCAGAATTGTCCTGTAGATTTTAAGCCCATCAGAAATGAAGCCAGCGCCAGCATTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTGCTGGTACAGCGGATGGAACTAGTTGCTGATTTATGGGATGAGAACTTTAAGGCTGATTTTGTTCCCACCCGTGATCCAAGTCTTACAGAGCAGTATGAGTATGCTTATGAACATGATATCAAATTTCTTGTCATCATTACAGATGCAGGTGTTTCACAAACAGGTTCTGTTAAGGTTCGACACCTTGAGCTAAAGAAGGAGAAGAATGTTGAGAGAGAAAACTTAATGAAGTTTCTGGTGGATGCTATGACAACACAATTTAGAAACCCCTCCATTTGGGTTTGA 3675 0.4182 MGKKKKKKGGGRSSGRTPSKSNDYVSPFTVHDDNDLSEEITALCAIFEDDCNIVSGSQIAIKLRPYFHDMGFYDSHVSALLLVRFLPGYPFKCPKLHITPENGLSQSHADQLLSLLLDQANLNAREGRVMIFNLVEAAQEFLSGIQPIAKSTDSKVLHSANEGNEELLLKDIASSNRNRSFVYGFIDLFSGYGESWNWGFGIDESPGKISPLPPSKLDASKRSLEAWEKKSGSKEKLSILQELPAKLDTVGEVSEDDNNSTSLTNSSRHLVEDLVENDNEDSIGDDYATEDNEDMYASESSSTASLTHHQASQTVEKDLMMVHLLRLSCASKGTLSESLPQVATELYNLGFLSDWAHDMASKSPSIFNKTFDRLFQKHLASSGVSQFWKPSSDFGGSNTVPHSSRYLNDFEEIRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPERILREVATLSRLQHQHVVRYYQAWFETGVVDSYGDAAWGSTTPLSSTFSYKAASTTDALGHEIQLESTYLYIQMEYCPRTLRQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDMGHPVDTTSLSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSSGVVFFELWHPFQTAMERHVVLSDLKQKGELPPAWVAEFPEQESLLRKLMSPGPSDRPSATELLHNAFPPRMESELLDDILRTMQKSEDRSIYDKVLNAIFDEEMLSTKHTRQAGGLGSVGDNSSSIHCTEFETEVRDYVVDVNKEIFRQHCAKRLEILTVHLLDDSPAFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHGALLDAIWSWIGVKVEHRLKVAELLSMMSSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGAADLALPRLRGALPSDKRTCKALDELSELLSFLRIWRIDNNVYVDALMPPTESYHRDLFFQVYLRKENSPGSLSEGALLAVGGRYDYLLNQLWSRDHKGNPPSGVGTSLALETVIQNCPVDFKPIRNEASASILVCSRGGGGLLVQRMELVADLWDENFKADFVPTRDPSLTEQYEYAYEHDIKFLVIITDAGVSQTGSVKVRHLELKKEKNVERENLMKFLVDAMTTQFRNPSIWV 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0280 1224 SUPERFAMILY UBC-like 34 142 IPR016135 -
Lal1g0280 1224 ProSitePatterns Tyrosine protein kinases specific active-site signature. 565 577 IPR008266 GO:0004672|GO:0006468
Lal1g0280 1224 MobiDBLite consensus disorder prediction 254 270 - -
Lal1g0280 1224 Gene3D Transferase(Phosphotransferase) domain 1 529 720 - -
Lal1g0280 1224 PANTHER HISTIDYL-TRNA SYNTHETASE 36 1223 - -
Lal1g0280 1224 SUPERFAMILY Class II aaRS and biotin synthetases 778 1102 IPR045864 -
Lal1g0280 1224 ProSiteProfiles RWD domain profile. 38 145 IPR006575 GO:0005515
Lal1g0280 1224 MobiDBLite consensus disorder prediction 1 27 - -
Lal1g0280 1224 ProSiteProfiles Protein kinase domain profile. 410 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0280 1224 SMART RWD2001b 38 145 IPR006575 GO:0005515
Lal1g0280 1224 Gene3D - 1115 1214 IPR036621 -
Lal1g0280 1224 ProSitePatterns Protein kinases ATP-binding region signature. 416 440 IPR017441 GO:0005524
Lal1g0280 1224 SUPERFAMILY Class II aaRS ABD-related 1117 1214 - -
Lal1g0280 1224 PANTHER EIF-2-ALPHA KINASE GCN2 36 1223 - -
Lal1g0280 1224 Pfam RWD domain 36 142 IPR006575 GO:0005515
Lal1g0280 1224 Pfam Histidyl-tRNA synthetase 858 1101 IPR041715 -
Lal1g0280 1224 Gene3D Bira Bifunctional Protein; Domain 2 773 1107 IPR045864 -
Lal1g0280 1224 Pfam Anticodon binding domain of tRNAs 1120 1216 IPR024435 -
Lal1g0280 1224 CDD STKc_EIF2AK4_GCN2_rpt2 403 710 - -
Lal1g0280 1224 Gene3D Phosphorylase Kinase; domain 1 398 526 - -
Lal1g0280 1224 Pfam Protein kinase domain 410 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0280 1224 Gene3D Ubiquitin Conjugating Enzyme 29 152 IPR016135 -
Lal1g0280 1224 SUPERFAMILY Protein kinase-like (PK-like) 406 719 IPR011009 -
Lal1g0280 1224 MobiDBLite consensus disorder prediction 249 288 - -
Lal1g0280 1224 Coils Coil 961 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0280 Lal-Chr1 1647420 1663137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0280 410 713 MAP Kinase Kinase Kinase AT1G63700 25.478 1.33e-21 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Lal1g0280 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0280 K16196 - gmx:100797996 1946.01