Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0274 ATGCCGCTTCCGATTAAATCAATGAGGCCTGCTTATGGCGGTGGCGGCAAGGATTTCGACGAAGTCCTTCCTTCGAACAACCTATGGGTTGGGAATCTAGCGCCGAGTGTAACCGACTCCGATCTTATGGATCTATTCGCTCAATACGGCGCTTTAGATAGCGTCACATCGTATTCGTCTCGGAGTTACGCTTTCGTTTTCTTCAAGCGCGTCGAAGATGCTAAATCCGCTAAGAACAATCTACAAGGATTCGCTCTCCGTGGCAATTACTTGAAGATTGAGTTTGCGAGACCGGCGAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCACGGCTGTCACAAGGGAAGAATTGGAAGCTGAATTTTGTAAATTTGGTAAAGTTGAGGAGTTTAAGTTCTTCAGAGACAGAAATACTGCTTGTGTTGAATTTTTCAATTTGGACGATGCTACTCAAGCTATGAAAATGATGAATGGGAAACGTATGGGTGGAGACCATTTACGTGTAGACTTTCTTCGATCTAACACTTTGAAAAAAGATCAGATGCTTGATTATGGGCAATTTCAGGGAAAAAGCTTTGGCCCTACTGATTCCTATACTGGACAAAAAAGACCACTGAATTCACAACTTCCAATGGGGAGGAAGGGCGATAGTCAACCTAGCAATGTTTTGTGGGTAGGTTATCCTCCAGATGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGCGAGATTGAGAGAATAAAGAGTTTTCCTTCGAGGAATAATTCGTTTGTCGAATTTAGAAGTGTCGATGAAGCTAGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGACCCTCGAATAACAATCTTGTATTCAAGCAGTGATCAGGTACCTGGCAAAGATTATCCTGGCTATTATCCCGGAAGTGATGGGCTAAGACCTGATGTATTCTTGAATGAGCATGCATTTCGTCCATTACAAATGGATATATTTGGTCATACTCCTATGGTTCCTAATAATTTTCCTGGACAGTTACCACCTAATGGTATTGGATCAACTGCACCAATGCGGCCTTTTGTTCCTCGAGGTAGTCTTGAATCTCGTATTTCTGGCCCTGGCTTTAATGAAGCGAGCTCACTCCACAAATTTCAAGATGGTAGCTCCAAGGGTAAGATGGGTCCAAACTGGAAAAGACCATCTCCTCCTGCATCAGGACTACTTCCTTCTCCTGCATCAGGGCTACTTCCTTCTCCTGCATCAGGTACTAGGCTTCCTGCAAGATCTGCCCCTGGTGCTTGGGATGTACACGACATAAACCATATCTCCAGAGACTCTAAACGTTCAAGGATAGATGGTCGTGGGTTAGCTATGGAACAAACGTATGGGATAGATCCAGTTAATCTTGGTCCAGTGAGCACAAGGATTGCAGGTGGAGTACATGGGCCTCCCGAAACTGATAGTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCATGCTAGATGTGTCCCTATTGGTAAAGGGATAGGGACTGAGCTCCCTGATGTTGTTGATTGCTCAGCGAGGACGGGATTGGATATACTCACAAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTTCCCGATAGCGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTACCTTAGTGCAAAAGATCGTGCTGGTGTTGCTAAGTTTGCTGATAACACCACCTTATTCTTGGTTCCTCCTTCTGATTTTCTAACAAAAGTTTTGAAAGTTCCAGGACCTGAACGTCTATATGGTGTGGTTCTGAAGTTTCCTCAAGTTCCAATTAGCGCACCAATGCAACAATCATCACATTTGCCTATACAGTCCACTCAGTATGTGCAGCAGATTCCTCCTTCACAGGCGGAGTATGGTTTGATTCCTGCAAAGGAGGAACAGGTTTTGCAAATGGATTATAACAGACTATTGCTTGAGGATTCTAAGCTTCCTCCTAAACCAGTATATCCAGTTACAAGTGGCCCCCCTTCAGTTCACCCTACGCGTACAGATTTTGCTCCCAGAAGTAATGCTTCTCTGTCCCAAGCTGGTGTTGCATTAACACCCGAGCTTATTGCAACGTTAACTAATTTTCTCCCCGCTACTACACCAGTGTCTGCCACTGATCTTACCAGCTCGGCTGGAAGCTCCTTGACTGTGAAACCTCCATTTCCCTCTGTTGCACACAATGATGGAAACCAATCTCAATTATGGAAACCAGAGCATCGAATTGCTGATCAATCTATTCACCCTCCTCAACCATTGGGGAATATGTATAACATTCAAAATGCTCACTATCAGCCTTATCCAGTGGCACCTACCTCTGGTCAGCCTGGTCAAGTGGTCTCAAGCAGTTCTCACACCCAAGAGACTGCTTCCAACTTACAGCAGCAAGGTGCCATGACTAATTTCCTGATGCCTTCTCAAAGTGGTCAGTTAGCTGTATCCCAACATGTCAATCATCAGTATCAAGTTCAACACTCCCCTGGCGCTCAGAAAGGCTTTGTAGGAATGCAAGGAACAGATACCTCTGTTTTATACAATTCTCAGGCTTTCATGGATCCTAATAATTCTTTTACCTCATCTATTCATGTTCAAAGTGCTAATCCTTCACGACAGCAAACTGTCATGCCATATACAGTGGAGCAAGTAAACTCAGACCCTTCCAATCAGCAGGTTCCTCTATTTGGAGTTGGTCAGGGCACATCAGAAGTGGAGGCCGATAAGAATCAGAGATACCAGTCGACATTACAGTTTGCAGCCAATCTTCTCCACCAAATACAGCAGCAGCAACAGCCAACCCAGGGAGGATCTGGGCCGGGAATTCAACAATGA 2898 0.4438 MPLPIKSMRPAYGGGGKDFDEVLPSNNLWVGNLAPSVTDSDLMDLFAQYGALDSVTSYSSRSYAFVFFKRVEDAKSAKNNLQGFALRGNYLKIEFARPAKPCKQLWVGGISTAVTREELEAEFCKFGKVEEFKFFRDRNTACVEFFNLDDATQAMKMMNGKRMGGDHLRVDFLRSNTLKKDQMLDYGQFQGKSFGPTDSYTGQKRPLNSQLPMGRKGDSQPSNVLWVGYPPDVQIDEQMLHNAMILFGEIERIKSFPSRNNSFVEFRSVDEARRAKEGLQGRLFNDPRITILYSSSDQVPGKDYPGYYPGSDGLRPDVFLNEHAFRPLQMDIFGHTPMVPNNFPGQLPPNGIGSTAPMRPFVPRGSLESRISGPGFNEASSLHKFQDGSSKGKMGPNWKRPSPPASGLLPSPASGLLPSPASGTRLPARSAPGAWDVHDINHISRDSKRSRIDGRGLAMEQTYGIDPVNLGPVSTRIAGGVHGPPETDSDHIWRGIIAKGGTPVCHARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKDRAGVAKFADNTTLFLVPPSDFLTKVLKVPGPERLYGVVLKFPQVPISAPMQQSSHLPIQSTQYVQQIPPSQAEYGLIPAKEEQVLQMDYNRLLLEDSKLPPKPVYPVTSGPPSVHPTRTDFAPRSNASLSQAGVALTPELIATLTNFLPATTPVSATDLTSSAGSSLTVKPPFPSVAHNDGNQSQLWKPEHRIADQSIHPPQPLGNMYNIQNAHYQPYPVAPTSGQPGQVVSSSSHTQETASNLQQQGAMTNFLMPSQSGQLAVSQHVNHQYQVQHSPGAQKGFVGMQGTDTSVLYNSQAFMDPNNSFTSSIHVQSANPSRQQTVMPYTVEQVNSDPSNQQVPLFGVGQGTSEVEADKNQRYQSTLQFAANLLHQIQQQQQPTQGGSGPGIQQ 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0274 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Lal1g0274 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Lal1g0274 965 MobiDBLite consensus disorder prediction 672 696 - -
Lal1g0274 965 SUPERFAMILY RNA-binding domain, RBD 199 304 IPR035979 GO:0003676
Lal1g0274 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 964 - -
Lal1g0274 965 Coils Coil 931 951 - -
Lal1g0274 965 Pfam SPOC domain 488 604 IPR012921 -
Lal1g0274 965 CDD RRM3_Spen 225 287 - -
Lal1g0274 965 SMART rrm1_1 104 171 IPR000504 GO:0003723
Lal1g0274 965 SMART rrm1_1 27 94 IPR000504 GO:0003723
Lal1g0274 965 SMART rrm1_1 224 292 IPR000504 GO:0003723
Lal1g0274 965 MobiDBLite consensus disorder prediction 194 217 - -
Lal1g0274 965 MobiDBLite consensus disorder prediction 375 430 - -
Lal1g0274 965 Gene3D - 18 99 IPR012677 -
Lal1g0274 965 CDD RRM3_Spen 105 174 - -
Lal1g0274 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 167 IPR000504 GO:0003723
Lal1g0274 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Lal1g0274 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Lal1g0274 965 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 20 964 - -
Lal1g0274 965 MobiDBLite consensus disorder prediction 194 219 - -
Lal1g0274 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Lal1g0274 965 CDD RRM3_Spen 28 97 - -
Lal1g0274 965 SUPERFAMILY RNA-binding domain, RBD 24 176 IPR035979 GO:0003676
Lal1g0274 965 Gene3D - 100 190 IPR012677 -
Lal1g0274 965 MobiDBLite consensus disorder prediction 730 756 - -
Lal1g0274 965 Gene3D - 213 305 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0274 Lal-Chr1 1605278 1615617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0274 27 286 Eukaryotic Initiation Factors Gene Family AT2G23350 23.827 4.41e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0274 - - gmx:100777570 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0363 25 2454865 2464800 Lal1g0274 1 1605278 1615617 PCT
Lal1g0274 1 1605278 1615617 Lal25g0363 25 2454865 2464800 PCT