Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0269 ATGCCATACCCTTCTTTCTTCAAGCTTGTTCTACCCTCTACTGTCCAAACCAAGCAGCTGAGGATTCCAGATAATTTTCTGAGGAAATATGAGGGCGAGCTTTCTACAACTGCTACACTCTCTGTTCCTGATGGTAGTGTCTGGTGTGTAGGATTAAAAAAGGCTGACAACAAACTTTGGTTTGTTGATGGTTGGCCAGAATTTGTTCAACGATATTCCATTTCTGTTGGATACTTGTTAGTATTCAGATACGAAGGAAAATCAGCTTTCAATGTTCATATTTTTAATTTGGCTACTTCTGAGATAAACTATCAGTCAGCCACACGAAGCAGTAATGAAGGGCCTTACTTTGCAAATCGTCTTAAATTTTTTGAAGAAATGGAAGATGAAGACTCTGTTGAATTCTTGGATTCACCCTCTCGCCCTACTCCTGGTGCTTTTCAAAACAAAGTTCTTCCTGGATCAGTGGATATCAAACCCGGCAAGAGTAATACTCCTCCAGCAGTGCAGAATCTATTTAATGGGTCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGGGGTGTCCTTTCTTCGAGAGGTTCTGATACACTAGGCAGTCAGTTGACAAGAGATATAGGTGTTCAGTTTAACGCAGTCGAATTTAAAAGGTCTACTGAGGAATTGAAACTGCGTGCTTCTTTTGAGGAGAAGGTTAAAAAAACTGAGAGAAAGAAGCGGAAGTCAACTCACGAAGGCCAGGAATCGTATGCTGAACATGGAGAGGAGACAGAAATCCGCAATAGATTTTATGAAAGTGCTTCTGCGAGGAAAAGAACTGTAACTGCTGAAGAAAGAGAAAGGGCGATCAATGCAGCAAAAACATTTGAACCAGATAATCCTTTCTGCCGGGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCATCATGCTTTGCGGAAAAGCATTTGAATGGAGTTTCAGGATTTATTAAACTTCAAAACTCGGATGGGAGACAGTGGCCGGTTCGGTGCCTTTATAAAGGAGGTAGAGCTAAGTTTAGCCAAGGGTGGTTTGAATTTGCATTAGAGAACAATATAGGGGAAGGTGATGTGTGTGTGTTTGAGCTGCTTAGAATGAAAGAGGTAGTGCTGCAAGTTACTGTTTTTCGAGTCATCGAGGATGTTGGTTTGTTGAGCCCTCCTTCACAGCAGAGCCAAAATTTGAGCCCACCTAAGCTGATGAACACTCCCTTGCAGCATCACCTTTCCTCAGTTAAACTAACTAGAAACTAG 1290 0.4186 MPYPSFFKLVLPSTVQTKQLRIPDNFLRKYEGELSTTATLSVPDGSVWCVGLKKADNKLWFVDGWPEFVQRYSISVGYLLVFRYEGKSAFNVHIFNLATSEINYQSATRSSNEGPYFANRLKFFEEMEDEDSVEFLDSPSRPTPGAFQNKVLPGSVDIKPGKSNTPPAVQNLFNGSKLNSINWGEGGGVLSSRGSDTLGSQLTRDIGVQFNAVEFKRSTEELKLRASFEEKVKKTERKKRKSTHEGQESYAEHGEETEIRNRFYESASARKRTVTAEERERAINAAKTFEPDNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQNSDGRQWPVRCLYKGGRAKFSQGWFEFALENNIGEGDVCVFELLRMKEVVLQVTVFRVIEDVGLLSPPSQQSQNLSPPKLMNTPLQHHLSSVKLTRN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0269 429 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Lal1g0269 429 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 419 - -
Lal1g0269 429 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Lal1g0269 429 SMART B3_2 296 391 IPR003340 GO:0003677
Lal1g0269 429 SMART B3_2 6 98 IPR003340 GO:0003677
Lal1g0269 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lal1g0269 429 PANTHER B3 DOMAIN-CONTAINING 1 419 - -
Lal1g0269 429 CDD B3_DNA 294 389 IPR003340 GO:0003677
Lal1g0269 429 Gene3D - 273 394 IPR015300 -
Lal1g0269 429 MobiDBLite consensus disorder prediction 230 255 - -
Lal1g0269 429 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Lal1g0269 429 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Lal1g0269 429 Coils Coil 225 245 - -
Lal1g0269 429 CDD B3_DNA 4 96 IPR003340 GO:0003677
Lal1g0269 429 Gene3D - 2 98 IPR015300 -
Lal1g0269 429 SUPERFAMILY DNA-binding pseudobarrel domain 290 392 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0269 Lal-Chr1 1578917 1582280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0269 1 395 B3 DNA Binding Superfamily AT3G18990 53.015 1.52e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal1g0269 B3 5.1e-17 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0269 1 1578917 1582280 Lal1g0269 1 1578917 1582280 ECH
Lal1g0269 1 1578917 1582280 Lal9g0175 9 1088667 1091476 LSH