Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0268 ATGGATAATGAAGTGGACAAATATTCCTTCATCACAATCATCAAGAAAGGCCTTAACACCCACCAAATGATGATTCCATCAGATTTAGTGAAGTATTGTAATGAAGACTTCTCTACCAATGTGATTCTTATAGGTCCTTTTGGTGACCCATGCCAAGTTACTATTTTCGAGAAAGATGGCATTTATATGCAAAAGGGTTGGCCAAGATTTCTGAGAAACAACTTAATAGTGGAAAATGAGTTGCTGCTTTTCACATATGAGGGAGAGAATTACTTCCACGTGCAAATATTTGATGTGAATGGATCTGAGAGACTAAACACTAATATAGCAGGACAGTTAGAAGCTTCAAGGCACAACATATTCAGATGTGGTTCCACACAACAGAAGAGTAGTGCAACCAAGGTGTACTCATCATTCTTCACAGTCTTCATTCCAAAGTTTTGCTCTGAGAGATTGCTTATTCCAAATGATATTCTGAAACTGGCAAGCTTTGAGGAAAGGGTACCTAAGAAACTCATCCTTAGAAATTACAGTGAGGTGGGCTGGAATGTGAGAGCACTGCGCGTTGGCGACAACATATGCTTCGTTGATGGTTGGAAGCAATTTGTGGCAGACAATTGCTTAGAGGGAGAGGACTTCATTTTTTTCAAATATGATGGCAAAGATAAAATGAAGTTCAAGGTCTTAAAGTTATGTGGGTGGGAACAAATAGGGGAAAAGGATGTGGGAATAAATGCAATAGAAATTGAGTTTATGCAAATAGAGAAAGAAAAAGACTGGGTTTTTGAGAAGCAGGATGATGAGTCTGGAGAGCATATAGGAGGAAATCATCATATAGCTGGAAAAGCTTCTGCTGGCAAGAGGATAACTGCAAGAAGTTCTGGAAGCAACAACATTGCAAATGCAAAGTATGTTCATTATGACAATCCATACTTCACTGCAATACAACAAAAAAGCAGAGAAAACGAATTACATTTTTCAAAAAAAATGATTGATGACTTCTCCCTCAACTTGCCACAAAAGATTACCCTTCTATGTTGTGAGCATGATGGAAGAAATGATGTGCCAGAAGAGACACACATCCGCAAAAACCGTAGGACAGTCACAGGAGAACTGCAGAAGTGGAACGATGGTCGCACATGTTACAAAGGCTGGAGAAGATTCTGCAGAATAAACAACATCGACATGAACAAAGATGAATGCATTTGTGAATTTGTGATGGGGGAAGACCAACAAATACAGATGTTACAAGTGCATGTTGTTAAGAATGGACTACTAATTATTGTATTGCAAACATTTGCCAATAGCAAGTTATCAAATTGCACACCAAAACGTGATGCTATTAAAAGCTCAAGGAGGAGGAAGGAGAATGTGCACTACATCACAGGGCATAATTCTTCTGGTGGATTGAAGGCTCAGAACAGTGTGACCTCACTAGGCCTCCCTGTATGCACTGAGCATTCCTTTTCAAAGGTGGTGAGCTCCTTGAAATCTCCATCAAAGGGCAAGGGCAGAGGTGGAGGGGTTGCCTCTCCAACTTGTAATGCTGCAGGTGAGATTTTCCAGATTGCAGCCATCTTGAATGGGCTTGTTCTTGTTGGTGTTGCTGTAGGATTTGTTCTTCTTAGAATTGAAGCATCTGGGGAAGAGGCTTCTGAGTGA 1662 0.4025 MDNEVDKYSFITIIKKGLNTHQMMIPSDLVKYCNEDFSTNVILIGPFGDPCQVTIFEKDGIYMQKGWPRFLRNNLIVENELLLFTYEGENYFHVQIFDVNGSERLNTNIAGQLEASRHNIFRCGSTQQKSSATKVYSSFFTVFIPKFCSERLLIPNDILKLASFEERVPKKLILRNYSEVGWNVRALRVGDNICFVDGWKQFVADNCLEGEDFIFFKYDGKDKMKFKVLKLCGWEQIGEKDVGINAIEIEFMQIEKEKDWVFEKQDDESGEHIGGNHHIAGKASAGKRITARSSGSNNIANAKYVHYDNPYFTAIQQKSRENELHFSKKMIDDFSLNLPQKITLLCCEHDGRNDVPEETHIRKNRRTVTGELQKWNDGRTCYKGWRRFCRINNIDMNKDECICEFVMGEDQQIQMLQVHVVKNGLLIIVLQTFANSKLSNCTPKRDAIKSSRRRKENVHYITGHNSSGGLKAQNSVTSLGLPVCTEHSFSKVVSSLKSPSKGKGRGGGVASPTCNAAGEIFQIAAILNGLVLVGVAVGFVLLRIEASGEEASE 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0268 553 SUPERFAMILY DNA-binding pseudobarrel domain 137 231 IPR015300 -
Lal1g0268 553 ProSiteProfiles B3 DNA-binding domain profile. 8 100 IPR003340 GO:0003677
Lal1g0268 553 CDD B3_DNA 9 98 IPR003340 GO:0003677
Lal1g0268 553 SMART B3_2 10 100 IPR003340 GO:0003677
Lal1g0268 553 SMART B3_2 139 232 IPR003340 GO:0003677
Lal1g0268 553 Gene3D - 131 232 IPR015300 -
Lal1g0268 553 Gene3D - 2 101 IPR015300 -
Lal1g0268 553 SUPERFAMILY PetM subunit of the cytochrome b6f complex 517 547 - -
Lal1g0268 553 ProSiteProfiles B3 DNA-binding domain profile. 137 232 IPR003340 GO:0003677
Lal1g0268 553 Pfam B3 DNA binding domain 139 228 IPR003340 GO:0003677
Lal1g0268 553 PANTHER B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED 347 551 - -
Lal1g0268 553 SUPERFAMILY DNA-binding pseudobarrel domain 306 408 IPR015300 -
Lal1g0268 553 SUPERFAMILY DNA-binding pseudobarrel domain 6 101 IPR015300 -
Lal1g0268 553 Gene3D - 291 423 IPR015300 -
Lal1g0268 553 Pfam PetM family of cytochrome b6f complex subunit 7 518 545 IPR012595 GO:0009512
Lal1g0268 553 CDD B3_DNA 138 229 IPR003340 GO:0003677
Lal1g0268 553 Hamap Cytochrome b6-f complex subunit 7 [petM]. 516 548 IPR012595 GO:0009512
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0268 Lal-Chr1 1574778 1577643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0268 133 422 REM Transcription Factor Family AT3G53310 22.330 7.12e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal1g0268 B3 2.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0268 - - lang:109325151 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0268 1 1574778 1577643 Lal1g0268 1 1574778 1577643 ECH