Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0258 ATGATCTATCACCACCCTTCTCCGCCACCACTCCACCACCATCATTGGGCCCCATCACCAACTCCAACTCCTCTCATTAACAACCTATCACCTCCGTCAAAGTTACCGGTTGACTTTAGTCCACCTCTTATTGCAATGGTTGTTATTATAGTAACCGCTTTTTTATTCATCACGTACTCCCGTTTAATCGTCCGTCACCTCCGTCCTCCAATCCACAACCTCATCAACCGCTTCCGCCACCGCCGCTCCCGCTCTTTCCTCCCTTCGTCCTCCGGCGACCTAGACTCACTCCCTTTTGATTCTCCCTTCGACAGTGGACCCCACCCTTTCTCCCCTTACGGCCTCGACGACTCTATCATCAAAACCATTCCCTTCTTTCTCTATACTTTCACCATAAACGCCGACGAGTCACGCCGTGATTGCGCCGTTTGCTTGTTCGAATTTCAAGATGACGATTACGTCCGTACTCTCCCAATTTGTTCTCACACTTTCCACGTTGATTGCATCGATGCGTGGCTTCGTTCTCATGCTAACTGTCCCCTCTGCCGTGCCGGTGTTCTATGCGCAGATTCGCCGCCGTTCTTTACGCCGATGATGGCGGCAAGGATTCGTCCCAGTCTTGATGACGAAACTATATTGCATAGAATCAGCGTGGATCCTCTTATGGATTCTCGATCTCCGGTGCCGATGTTTAACTCCGCCGTTCCGGAGATTACACCGTGTGAGGAAGATTCACAGAGAATCAATTCGGAGGATAGGTTTGGCCGTAGGGATTTTATGTTGAAGCGATCGTATTCGTTTGGATTCGAACGGAGCCTTCCATCGGATAGGATGATGATGGAACCGGCCACGGCATCTCCGTGGCGATACCGCAGAGGAAGCACAAGTTTCTGGAGCAAGAGGCCATCGCCGTTTGGTTCATTAGGTAAGCCAATGGTGTTCTCATTCAGGTATTACAGAGGGATGAAATCGCCGTTTTTCCGGCGAAGAGGCTTCTTCCCGTTGTCGGAATCCAGCGTAAGGTTCGCCGGCGGAGGGAGCTCATCGAGAAGGAGCAAATCAATAGCTAGTCCTGTGTTTCTGAGATCATCAGGATTGACGGCGGGAGTATCGGCTTTCTCGTCAAGTAGGCTCCGGTGCGGTGACCCGGAGGCGCTGCTCTCACCGGAGAGATTTAACCGAAGATGA 1188 0.5152 MIYHHPSPPPLHHHHWAPSPTPTPLINNLSPPSKLPVDFSPPLIAMVVIIVTAFLFITYSRLIVRHLRPPIHNLINRFRHRRSRSFLPSSSGDLDSLPFDSPFDSGPHPFSPYGLDDSIIKTIPFFLYTFTINADESRRDCAVCLFEFQDDDYVRTLPICSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPPFFTPMMAARIRPSLDDETILHRISVDPLMDSRSPVPMFNSAVPEITPCEEDSQRINSEDRFGRRDFMLKRSYSFGFERSLPSDRMMMEPATASPWRYRRGSTSFWSKRPSPFGSLGKPMVFSFRYYRGMKSPFFRRRGFFPLSESSVRFAGGGSSSRRSKSIASPVFLRSSGLTAGVSAFSSSRLRCGDPEALLSPERFNRR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0258 395 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 366 IPR044675 -
Lal1g0258 395 CDD RING-H2_PA-TM-RING 140 183 - -
Lal1g0258 395 SUPERFAMILY RING/U-box 125 189 - -
Lal1g0258 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 187 IPR013083 -
Lal1g0258 395 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 366 - -
Lal1g0258 395 SMART ring_2 141 182 IPR001841 -
Lal1g0258 395 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Lal1g0258 395 Pfam Ring finger domain 140 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0258 Lal-Chr1 1531596 1532783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0258 29 395 C3H Transcription Factor Family AT3G18930 51.134 9.90e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0258 - K19041 gmx:100806115 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0258 1 1531596 1532783 Lal1g0258 1 1531596 1532783 ECH