Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0249 ATGGTGGATTACGTCAGCAGCGACGATGATTATCAATACTCCGACGATCAAGATTACTCCGCCGACGCTTACGAAAGCGACGAAATCGATTATCAGTTAGTTACTGCCAAGGCTTCCTCTACTCAGGTGATTACGAAAGAGTCGCTGCTAGCTGCACAGAGGGAGGATTTGCGAAGTGTGATGGACATGCTATCAGTGAAAGAGCAACATGCACGGACCCTGCTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTGGACAATGGGGTTACACATCTCTTCACGGAAGCTGGTGTGGCTTTGGATAAACATCATCACTCTAACTCGTCAGTTCACTCTTTACTAATGTGTGAAATCTGCATAGAGGATGTTCCTAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGTTTTTGCAACACATGTTGGACAGAGCATTTTGTTGTCAAGATAAACGAGGGCCAAAGTAAACGCATTAGATGTATGGCGCACAAATGCTATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTACTTGGTAGAAAGCACCCTGATATGGCCGAGAAATATGAACGCTTTCTTCTTGAGTCTTACATCGAAGACAACAAGAGAGTTAAATGGTGTCCTAGTATACCTCACTGTGGGAATGCAATACGTGTTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTCAGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGCGAAGAAGTGTCAGGATGAATCAGAAACTGTTAACTGGATAACTGGTCATACAAAACCTTGTCCAAAGTGCCACAAGCCAGTGGAGAAGAGTGGTGGGTGTAACTTGGTTAGCTGTATCTGTGGCCAACCATTTTGTTGGGTGTGTGGTGGAGCCACCGGCAGAGATCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTTCAAAGAACAAGAATCGGCTGAACGGGCAAAGCGGGATCTATATCGTTATATGCACTATCATAACCGCTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTGAACTTAAAGAGACATTACAAGGGAGGATTGATATTTCAGAAGAAAAAGACTCTAATCTCAGAGATTATAGCTGGGTAATTAATGGTCTCTCCAAACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGGCGAAATGTCAAATGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAGAAAATATCTAAAATTTTGGCCGAGCCTTTTGATAGCTTTCCTCATGATAAGGTTCTGGAGATAAGAATGCAGATAATCAATCAGTCGACAGTTATTGACAAACTCTGTCAAAAAATGTATGATTGCATCGAGAATGATTTATTGGGTTCTCTCCAGAAAACTCACAGCATAGCTCTATACAAGTCAAATGGCATTGAGAGGGCATCAGAACTTTCAGTTTGA 1566 0.4163 MVDYVSSDDDYQYSDDQDYSADAYESDEIDYQLVTAKASSTQVITKESLLAAQREDLRSVMDMLSVKEQHARTLLIYHRWDVEKLFAVYVDNGVTHLFTEAGVALDKHHHSNSSVHSLLMCEICIEDVPSDEATRMDCGHCFCNTCWTEHFVVKINEGQSKRIRCMAHKCYSICDEAVVRTLLGRKHPDMAEKYERFLLESYIEDNKRVKWCPSIPHCGNAIRVEDDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCQDESETVNWITGHTKPCPKCHKPVEKSGGCNLVSCICGQPFCWVCGGATGRDHTWSSIAGHSCGRFKEQESAERAKRDLYRYMHYHNRYKAHTDSFKLESELKETLQGRIDISEEKDSNLRDYSWVINGLSKLFRSRRVLSYSYAFAFYMFGDELFKGEMSNAQREIKQNLFEDQQQQLEANVEKISKILAEPFDSFPHDKVLEIRMQIINQSTVIDKLCQKMYDCIENDLLGSLQKTHSIALYKSNGIERASELSV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0249 521 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 500 IPR031127 GO:0004842|GO:0016567
Lal1g0249 521 SUPERFAMILY RING/U-box 192 260 - -
Lal1g0249 521 SUPERFAMILY RING/U-box 262 319 - -
Lal1g0249 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED 5 500 - -
Lal1g0249 521 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 -
Lal1g0249 521 Gene3D - 250 496 - -
Lal1g0249 521 SUPERFAMILY RING/U-box 117 204 - -
Lal1g0249 521 Pfam Ariadne domain 333 521 IPR045840 -
Lal1g0249 521 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Lal1g0249 521 SMART ibrneu5 262 327 IPR002867 -
Lal1g0249 521 SMART ibrneu5 192 254 IPR002867 -
Lal1g0249 521 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Lal1g0249 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0249 Lal-Chr1 1498186 1501671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0249 61 519 ARIADNE family AT2G16090 70.968 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0249 K11968 - gmx:100783343 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0249 1 1498186 1501671 Lal1g0249 1 1498186 1501671 ECH
Lal1g0249 1 1498186 1501671 Lal9g0172 9 1058498 1062883 LSH