Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0230 ATGACGGCCTCCACCGGCGGCCATATACCGGAGATGGCAAACAAAACCTCATTTCTTGGCCTGAAGCTATTCATCTTAATAATCATATTGTTTTCTATAGCAGTGGTAATTGTGCTACTCTTCATCTTCCTCTGCTTTCGACGAATGCTACTCAAGAAGAAGAAAAGGTCCGGTACAATCCCTCTGGTCTCCGTCGAGGTCAAACACAAACCAACAGATCTCATCATTGAACAAAAACAAGTCGTTGAGATCGAAGATGTTGAGGCAAAGAAGAATGAGATATCGGAGCTAAAGGTTGAGATAGGGAAGAATAGTGAGGGAGAGAGCAGTGACGTGTCATGTGGGGGCCAAAGTGAAACGTCGTCGTTGTCGGTGGAGGATCCGAATATAGGGTGGGGGAAGTGGTATAGCATGAAAGAAGTTGAATTTGCAACGCGTGGGTTCGCACAAGAGAATGTGATTGGTGAAGGAGGTTATGGAATTGTGTACAGAGGAGTTTTGCAAGATGGTTATGTTGTCGCTGTTAAGAATCTTTTCAACAACAAGGGTCAGGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTTAGGCATAAGAATTTGGTTCGCTTAGTAGGATATTGTGCAGATGGTGTTAGAAGGATGCTTGTTTATGAATATGTTGACAATGGAAATTTGGAGCAGTGGCTACACGGTGATGTAGGACCAATCAGCCCCTTGACTTGGGACATTCGAATGAGGATTGCCGTTAGCACTGCAAAAGGGCTAGCCTATTTGCACGAAGGTCTAGAACCCAAAGTTGTGCACCGAGATATAAAATCCAGCAATATTCTTTTAGACAAAAAATGGAATGCCAAGGTATCTGATTTTGGGCTTGCCAAGCTCTTAGGATCTGAGAAAACCCATGTGACTACGCGTGTAATGGGAACATTTGGATACGTTTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAGCGCAGTGATGTATATAGCTTTGGAGTTCTACTTATGGAGATAATTACAGGACGAAGCCCTATTGATTATTCTAAACCACCCGGAGAGATGAATTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGTCGTGGTGATGAGCTAGTTGATCCTTTAATTGAGGTTCAGCCCTCTCCAAGATCTCTGAAGCGAGCTTTACTGGTTTGTCTGCGCTGTATAGATTTGGATGTCATTAAGCGACCAAAGATGGGACAAATTGTTCATATGCTTGAAGCAGACGATTTTCCCTTTCGTTCTGAGCATCGGACATTGAGAGAGAAAGATCTGGTGCCTTCTCATGCAAATATTTACAGTAAAGATCCATATCCATCAAAACATGCAGAACTTGCAGAAAAATCAAAATGGAGATGA 1398 0.4313 MTASTGGHIPEMANKTSFLGLKLFILIIILFSIAVVIVLLFIFLCFRRMLLKKKKRSGTIPLVSVEVKHKPTDLIIEQKQVVEIEDVEAKKNEISELKVEIGKNSEGESSDVSCGGQSETSSLSVEDPNIGWGKWYSMKEVEFATRGFAQENVIGEGGYGIVYRGVLQDGYVVAVKNLFNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCADGVRRMLVYEYVDNGNLEQWLHGDVGPISPLTWDIRMRIAVSTAKGLAYLHEGLEPKVVHRDIKSSNILLDKKWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSKPPGEMNLVDWFKGMVASRRGDELVDPLIEVQPSPRSLKRALLVCLRCIDLDVIKRPKMGQIVHMLEADDFPFRSEHRTLREKDLVPSHANIYSKDPYPSKHAELAEKSKWR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0230 465 SMART serkin_6 148 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0230 465 Gene3D Transferase(Phosphotransferase) domain 1 224 434 - -
Lal1g0230 465 Gene3D Phosphorylase Kinase; domain 1 116 223 - -
Lal1g0230 465 PANTHER OS01G0323000 PROTEIN 14 465 - -
Lal1g0230 465 ProSitePatterns Protein kinases ATP-binding region signature. 154 176 IPR017441 GO:0005524
Lal1g0230 465 CDD STKc_IRAK 154 420 - -
Lal1g0230 465 SUPERFAMILY Protein kinase-like (PK-like) 124 420 IPR011009 -
Lal1g0230 465 MobiDBLite consensus disorder prediction 444 465 - -
Lal1g0230 465 Pfam Protein kinase domain 149 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0230 465 MobiDBLite consensus disorder prediction 105 124 - -
Lal1g0230 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Lal1g0230 465 MobiDBLite consensus disorder prediction 106 124 - -
Lal1g0230 465 ProSiteProfiles Protein kinase domain profile. 148 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0230 465 PANTHER RECEPTOR-LIKE KINASE 14 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0230 Lal-Chr1 1365206 1369292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0230 4 422 Trihelix Transcription Factor Family AT1G70460 42.254 1.28e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lal1g0230 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0230 - - lang:109351508 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0230 1 1365206 1369292 Lal1g0230 1 1365206 1369292 ECH
Lal1g0230 1 1365206 1369292 Lal2g0146 2 874165 883396 ECH
Lal1g0230 1 1365206 1369292 Lal2g0146 2 874165 883396 LSH