Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0225 ATGGCTTCCGGTGACGTTGAGTACCGTTGTTTCGTTGGTGGCCTAGCATGGACCACCGATAGCGAAGCACTGGAGAAGGCTTTCTCTGCCTATGGTGAAATCGTTGATTCGAAGGTTATAAACGATCGTGAAACTGGAAGGTCAAGGGGTTTCGGATTCGTTACCTTTGCAAATGAGCAATCTATGAGGGACGCGATCGAGGCCTTGAACGGCCAGGATCTTGATGGCCGTAATATAACCGTTAACGAGGCTCAATCCCGCGGTAGCGGTGGTGGAGGCGGTGGCGGATATAACCGTGGAGGCGGTGGTGGTGGATATGGAGGCGGTGGTGGTGGATACAGTCGTGGAGGCGGTGGTGGTGGATATGGTGGTGGCCGTCGTGAAGGAGGTGGGTACAATAGAAGTGGTGGTGGTGGAGGATATGGAGGTGGTGGTGGTGGTTATGGAGGTGGAGGTGGTGGCTATGGAGGAGGTGGTGGTGACCGTGGATATGGTGGCGGATCCCGTTACTCTAGGGGAGGTGGAGACTCTGAAGGTGGCTGGAGGAGTTAA 552 0.5525 MASGDVEYRCFVGGLAWTTDSEALEKAFSAYGEIVDSKVINDRETGRSRGFGFVTFANEQSMRDAIEALNGQDLDGRNITVNEAQSRGSGGGGGGGYNRGGGGGGYGGGGGGYSRGGGGGGYGGGRREGGGYNRSGGGGGYGGGGGGYGGGGGGYGGGGGDRGYGGGSRYSRGGGDSEGGWRS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0225 183 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Lal1g0225 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lal1g0225 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lal1g0225 183 Gene3D - 2 119 IPR012677 -
Lal1g0225 183 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 141 - -
Lal1g0225 183 PANTHER GEO13361P1-RELATED 1 141 - -
Lal1g0225 183 MobiDBLite consensus disorder prediction 151 183 - -
Lal1g0225 183 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0225 Lal-Chr1 1339452 1342886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0225 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 39.241 9.77e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0225 - K13195 ccaj:109800369 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0225 1 1339452 1342886 Lal1g0225 1 1339452 1342886 ECH
Lal1g0225 1 1339452 1342886 Lal2g0141 2 852899 853875 LSH
Lal1g0225 1 1339452 1342886 Lal9g0161 9 1018519 1019819 LSH