Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0223 ATGGCTTCAAGTTCTCTGAGCAAACAAAAGCCTTCTGATTCCTCATGGACACCAAAACAAAACAAGTTATTTGAAAAAGCACTTGCAAAATATGATAAGGATACCCCTGATCGATGGCAGAATGTAGCAAAAGCAGTTGGTGGAAAATCACCAGATGAAGTTAAGAAGCACTATGAAATCCTCTTGGAGGATCTTAGGCACATAGAGTCTGGTCGTATTCCTATTCCCAACTACAAATCCTCAGTAACCACTACCAATGTTGATGAAGAAGAGAGACTACTGAAGTATCTGAAGCTGGACTGA 303 0.4026 MASSSLSKQKPSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSPDEVKKHYEILLEDLRHIESGRIPIPNYKSSVTTTNVDEEERLLKYLKLD 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0223 100 CDD SANT 15 62 IPR001005 -
Lal1g0223 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Lal1g0223 100 SMART sant 12 64 IPR001005 -
Lal1g0223 100 MobiDBLite consensus disorder prediction 1 20 - -
Lal1g0223 100 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Lal1g0223 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Lal1g0223 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Lal1g0223 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Lal1g0223 100 Gene3D - 7 75 - -
Lal1g0223 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0223 Lal-Chr1 1327480 1328772 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal1g0223 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0223 - - gmx:100798314 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0223 1 1327480 1328772 Lal1g0223 1 1327480 1328772 ECH
Lal1g0223 1 1327480 1328772 Lal23g1420 23 14712257 14713949 ECH
Lal1g0223 1 1327480 1328772 Lal9g0159 9 1000589 1001984 LSH