Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0222 ATGTTGCACTGTCTCAACACTTCGGGGAATGTAGGTGGAACCTGTTCAGATATGAAAGTGTTTGAAATACAAAGAGCAAGGAAGAAATGGCTACAACAACACCATGAAGACCAACAACAACAACAACCTCAGGGATTAATGATGATGATGATGGGTTGTGGTGATTCAGTGCTTGGTGACGTGGTGGCTCAATCAATGAAATCTGACCCGGGTTTTGAAAATGGGTTACCTGAATTGGGAGTGTTTGACATGGGATTCGGGTCTTCTTTATTGCCACCTGCTTCATCTGGGTTTGAAGTCAATTCCTCTGTTTCAAGGACTTGTAGCAGAGACATGGCTTTACCAACGCAAAAGAAAGAAACATTCAAGAAGAGGAAACCTGAAAAGGCTCAGAATTCCAAGGTTGTAGCAGAAAGTGATAACAAAGAGAAGAAGATTAAAGTAAGTGGGGATGAAGAGGAATCCATTAACAAGAATACAAAGGCAAGGGCAAACACAAATAAGAAGAACAAGGAAGTGTGTGGTGAAAGTTCGAAGGAGAATTCGAAAGAGTCTGAGGTTCAAAATCCAAAGCCTGATTACATTCATGTCCGAGCACGCCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTAAGAAGGGAAAAGATTAGCGAAAGGATGAAGTATTTGCAAGATTTAGTACCAGGTTGCAACAAAATCACAGGGAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCACTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGGCTTGACTTCAACATTGATGATTTGTTTGCCAAAGAGGTATTCCCGGCTTGTTCTTCAAGTTTTCCGAACATAGGGGTGCAATCAGACATAACTACTACTAACCCTGCATATTTTCACTTCAATCCAGCACAACTTGTTTCATGCTGCAATGGATTAATGAACAACATGGGAATAAATCCTTCAGATCTGGGGCTTCGCAGGACTACTAGCGCACCTGTATCTTTGCCCGAAACGTTTATCGACTCATCATCTTGCTTCACTGTAGGTTTCTCCTATCAAATTTTACCTTCCTCAACTTGGGAAGGAGATTTCCAAAACCTTTATAATAATGTGGCTTTTGATCAAGCACGAACAGCATCATTTCCTTCTCAACCATTTACAGGTCTAGTTGACACTAGCAATCTAAAGATGGAGATGTAA 1230 0.4081 MLHCLNTSGNVGGTCSDMKVFEIQRARKKWLQQHHEDQQQQQPQGLMMMMMGCGDSVLGDVVAQSMKSDPGFENGLPELGVFDMGFGSSLLPPASSGFEVNSSVSRTCSRDMALPTQKKETFKKRKPEKAQNSKVVAESDNKEKKIKVSGDEEESINKNTKARANTNKKNKEVCGESSKENSKESEVQNPKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFAKEVFPACSSSFPNIGVQSDITTTNPAYFHFNPAQLVSCCNGLMNNMGINPSDLGLRRTTSAPVSLPETFIDSSSCFTVGFSYQILPSSTWEGDFQNLYNNVAFDQARTASFPSQPFTGLVDTSNLKMEM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0222 409 CDD bHLH_AtBPE_like 193 278 - -
Lal1g0222 409 MobiDBLite consensus disorder prediction 116 192 - -
Lal1g0222 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 253 IPR011598 GO:0046983
Lal1g0222 409 MobiDBLite consensus disorder prediction 96 192 - -
Lal1g0222 409 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 16 389 - -
Lal1g0222 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 272 IPR036638 GO:0046983
Lal1g0222 409 SMART finulus 209 259 IPR011598 GO:0046983
Lal1g0222 409 Gene3D - 200 274 IPR036638 GO:0046983
Lal1g0222 409 MobiDBLite consensus disorder prediction 96 114 - -
Lal1g0222 409 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 389 IPR024097 GO:0006355
Lal1g0222 409 Pfam Helix-loop-helix DNA-binding domain 207 254 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0222 Lal-Chr1 1310638 1314022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0222 122 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 43.357 6.15e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g0222 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0222 - - gmx:100794256 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0222 1 1310638 1314022 Lal2g0139 2 845031 847383 LSH