Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0202 ATGAAGATCCAGTGTGATGTTTGTGAGAAGGAGGAAGCCTCTGTGTTCTGTTCTGCAGATGAAGCTTCTCTCTGCTATGCCTGTGATTATACCATCCACCATGCCAACAAGCTTGCAAGCAAACACAAACGCTTCTCTCTTCACAAACCAACCTCCAAATACACACCCCTTTGTGATATCTGCCAAGAGAGGCGTGCATATATCTTTTGCCGAGAAGATAGAGCAATATTTTGCACAGAATGTGACCTTCCTATTCATAGAGCCAATGAAAATACCCAGAAACATAACAGGTTTCTTCTGACAGGTGTGAAGGTTGGTGCAGGTTGCTCCTCAAACCCAACATTGCTATGCTCCAATGGTACTGCCACTGAAATCGAATTAAGAAACTCTTGTTCTAAAGCAAACATGTCAAGTGACACGGGTTCAGTTTCAACAAGCAGTATTTCTGAGTATTTGACAGAGACCATACCTGGTTACTGCATGGAAGACCTTCTTGATGCACCTAATGGTTTTTTCTATAAGGATTATGAGTACCACATAAAGTTTCAAGACCAAGATCTTTTTCAAGAAAACATGTGTTCTTTTCCATTTGCATCGTGTTCACCACAATCTCAAGTTAGATCCTCTCAACTCAGCACTTGGAATGTTCCACAGATTGATTATTTAGTTGGAGTTAAGGAACTACCAAAAGCCCAAGCTGTTGAAGGATACTATAATGGCTACACACTCCCTTCAGTTACTCCTCCTTTGATCAAAAAGAGTAAACGCTCTCGTTGA 777 0.4118 MKIQCDVCEKEEASVFCSADEASLCYACDYTIHHANKLASKHKRFSLHKPTSKYTPLCDICQERRAYIFCREDRAIFCTECDLPIHRANENTQKHNRFLLTGVKVGAGCSSNPTLLCSNGTATEIELRNSCSKANMSSDTGSVSTSSISEYLTETIPGYCMEDLLDAPNGFFYKDYEYHIKFQDQDLFQENMCSFPFASCSPQSQVRSSQLSTWNVPQIDYLVGVKELPKAQAVEGYYNGYTLPSVTPPLIKKSKRSR 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0202 258 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lal1g0202 258 Gene3D Classic Zinc Finger 1 100 - -
Lal1g0202 258 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal1g0202 258 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 208 - -
Lal1g0202 258 CDD Bbox1_BBX-like 57 100 - -
Lal1g0202 258 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lal1g0202 258 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Lal1g0202 258 CDD Bbox1_BBX-like 5 47 - -
Lal1g0202 258 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal1g0202 258 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lal1g0202 258 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0202 Lal-Chr1 1213746 1215029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0202 1 175 C2C2-CO-like Transcription Factor Family AT4G39070 47.393 3.60e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal1g0202 zf-B_box 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0202 - - gmx:100790232 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0202 1 1213746 1215029 Lal1g0202 1 1213746 1215029 ECH
Lal1g0202 1 1213746 1215029 Lal23g1455 23 14914968 14916678 ECH
Lal1g0202 1 1213746 1215029 Lal2g0122 2 745139 747631 LSH
Lal1g0202 1 1213746 1215029 Lal9g0139 9 898895 902104 LSH