Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0187 ATGTCGCTGTCAACCGGAAACAGCAGTAAAATCCGCCGCATTGTCCGAATGAGGCAAATGCTTTTCCAGTGGCGAAACAAAGCGCGCGTCACCGCCACTCGAACACCATCGGATGTTCCGGCAGGTTACATAGCAGTGTGTGTGGGTCCTACCATGAGCAGGTTTATTATACGCGCCACCTACTTGAACCACCCTATATTTGTAAAGCTATTGAATGAAGTTGAAGAAGAATATGGTTTCTGTAACCATGGCCCACTTACCATACCCTGCGATCAGGATTATTTCAGAGAACTACTTCGTGTTATGGCGCAACCCAAATGTTTCAACACTATTGAAGATTTCCATAAAAGCTGCCACTTAATTTTTCCGTCCTCTGTTTTAAATAGTTACAGGGATGGATCTTACGGTGTACTGTAA 417 0.446 MSLSTGNSSKIRRIVRMRQMLFQWRNKARVTATRTPSDVPAGYIAVCVGPTMSRFIIRATYLNHPIFVKLLNEVEEEYGFCNHGPLTIPCDQDYFRELLRVMAQPKCFNTIEDFHKSCHLIFPSSVLNSYRDGSYGVL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0187 138 Pfam Auxin responsive protein 17 101 IPR003676 GO:0009733
Lal1g0187 138 PANTHER SMALL AUXIN-UP RNA-RELATED 6 123 - -
Lal1g0187 138 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 123 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0187 Lal-Chr1 1132458 1133048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0187 6 120 Calmodulin-binding Proteins AT4G34750 41.732 3.10e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0187 K14488 - pvy:116116160 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0187 1 1132458 1133048 Lal1g0187 1 1132458 1133048 ECH
Lal1g0187 1 1132458 1133048 Lal2g0110 2 674109 674522 LSH