LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0169	ATGGATGTAGGAAATAAGAACAAGGATGAATCCATCATGTCATGGGAAGTGAGGTTTAATGTAGCTGTTGGGATTGCTGAAGCCCTGGATTACCTACACATGGAAACTTTGAAGCCTGTTATACATAGAGATATCAAGTCTTCAAACATTCTTCTTTCCCATGAGTTAGAACCACAATTATCTGATTTCGGACTTGCACTATGGGGACCAACATCTTCATCCTTTCTAACACAAGAAGATGTTGTAGGAACATTTGGTTATATTGCTCCTGAATACTTCATGTATGGAAAAGTCAGCGACAAGATAGATGTATATGCCTTTGGTGTGGTGCTGCTTGAACTAATATCAGGACGGGAACCAATCAGTTCAGAACCTTGCAAAGGACAGAAGAACTTGGTCATGTGGGCAAAACCAATAATGGAGAGTGGGAATGTTAAAGGCTTATTGGATCCAAATTTAGAAGGGAAGATTGATGAAGCTCAAATGCAAAGAATGGTTCTGGCTGCATCTCTATGCATTACACGTGCTGCTAGGCTCCGTCCTAAACTGAACCAGATACTAAAAATCTTAAAAGGAGATGAGAAAGTGGAATATTTCTTCAACTCCTTGGAAAATGATTATGAGCATTCAGAAAATCAAGAAAGCATTGATGATGAAGTCTATCCAAATTCAAGTGCAGAGTTACACTTGAGCTTGGCATTACTTGGTGTTGACGATGACACTATATCATATAGCAGTACAGATCACAGCAATAGTGAACACTCGAAAGAACAATGGAGCAGATCATCAAAGTGGAATCGTGTGATAGTGATTATAAAGAGACCCAAAAGAACAATTCCTGTCGTCGAATCTCTCACCCTAATCAATTCCCTTGTAATGGAAGACGGCGAGCTTGATTTCTTGAACCAGAAAGTGTTTTCAAGTCCAAACATGGCTAATATTCCTAGCAGCGGTTCAATGGACAGTTTCTTTGAGGAACTCCTCAATGACAACGTGCATGCTTGCAGTCACACTCACACTTGCAACCCTCCTGGCCCTGATTTTTTGCATACCCACACTTGTTACCATGTTCATACCAAAATTGTCCCTGCCCCGGGTGAAGAACAGGTTGCCACTGATGATACTGCTGAGTCTGCTGAAAATAAATCGAAAAAGCGTCCTGTGGGTAATCGCGAAGCAGTTCGCAAATACCGCGAGAAGAAGAAAGCCCGCACAGCATCTCTCGAGGAAGAGGTTGTGAAATTAAGAGCTTTGAATCAGCATTTGATGAAGAAGCTGCAAGGTCAGGCTGCTTTAGAGAGAGAGGTTGCAAGGCTGAAGTGCTTGCTAGTTGACATACGGGGAAGGATTGAAGGAGAAATTAGAACTTTTCCTTATCAGAAACCAGTTAATTCTGATCCGCCAATCATGAACATTCCGGGTTCTTATGTAATGAACCCTTGTAACATGCAGTGTGATGACCAAGTGTATTGCCTTCATCCGGGAGCAGAAGGGAAGGTGACAGAAGGGGTATCACTAAATGGGGAAGAATTTAATGGTTGTGAATTTGAGAATCTCCTGTGTGAGTTTGGGCTCAAGGATCTTCATGCTCATGGAGTTGGACAGACATTGCCTAATGCTTGTTCTTCTGCATCAAATAAAAGAAAAGGGGGATCTCGTGCAGCAACAGCTGGTTGA	1677	0.4204	MDVGNKNKDESIMSWEVRFNVAVGIAEALDYLHMETLKPVIHRDIKSSNILLSHELEPQLSDFGLALWGPTSSSFLTQEDVVGTFGYIAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSEPCKGQKNLVMWAKPIMESGNVKGLLDPNLEGKIDEAQMQRMVLAASLCITRAARLRPKLNQILKILKGDEKVEYFFNSLENDYEHSENQESIDDEVYPNSSAELHLSLALLGVDDDTISYSSTDHSNSEHSKEQWSRSSKWNRVIVIIKRPKRTIPVVESLTLINSLVMEDGELDFLNQKVFSSPNMANIPSSGSMDSFFEELLNDNVHACSHTHTCNPPGPDFLHTHTCYHVHTKIVPAPGEEQVATDDTAESAENKSKKRPVGNREAVRKYREKKKARTASLEEEVVKLRALNQHLMKKLQGQAALEREVARLKCLLVDIRGRIEGEIRTFPYQKPVNSDPPIMNIPGSYVMNPCNMQCDDQVYCLHPGAEGKVTEGVSLNGEEFNGCEFENLLCEFGLKDLHAHGVGQTLPNACSSASNKRKGGSRAATAG	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0169	558	Pfam	Protein kinase domain	11	131	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal1g0169	558	Gene3D	-	370	446	-	-
	Lal1g0169	558	MobiDBLite	consensus disorder prediction	375	396	-	-
	Lal1g0169	558	Pfam	Basic region leucine zipper	380	435	IPR004827	GO:0003700\|GO:0006355
	Lal1g0169	558	MobiDBLite	consensus disorder prediction	366	400	-	-
	Lal1g0169	558	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1	7	247	-	-
	Lal1g0169	558	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	40	52	IPR008271	GO:0004672\|GO:0006468
	Lal1g0169	558	SUPERFAMILY	Leucine zipper domain	382	439	IPR046347	GO:0003700\|GO:0006355
	Lal1g0169	558	SMART	serkin_6	1	189	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal1g0169	558	Coils	Coil	398	425	-	-
	Lal1g0169	558	SMART	brlzneu	378	445	IPR004827	GO:0003700\|GO:0006355
	Lal1g0169	558	SUPERFAMILY	Protein kinase-like (PK-like)	9	194	IPR011009	-
	Lal1g0169	558	Gene3D	Transferase(Phosphotransferase) domain 1	4	213	-	-
	Lal1g0169	558	CDD	bZIP	384	437	-	-
	Lal1g0169	558	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	380	446	IPR004827	GO:0003700\|GO:0006355
	Lal1g0169	558	ProSiteProfiles	Protein kinase domain profile.	1	200	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lal1g0169	558	PANTHER	OS08G0249100 PROTEIN	7	247	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0169	Lal-Chr1	1066178	1073056	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g0169	293	557	bZIP Transcription Factor Family	AT4G35040	58.427	1.55e-102	308

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lal1g0169		Pkinase	5.6e-25	CL0016
	TF	bZIP	Lal1g0169		Pkinase	5.6e-25	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0169	-		K25785	lang:109355495	473.396

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0169	1	1066178	1073056	Lal1g0169	1	1066178	1073056	ECH
	Lal1g0169	1	1066178	1073056	Lal2g0101	2	637295	638053	LSH
	Lal1g0169	1	1066178	1073056	Lal9g0124	9	819518	822238	LSH