Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0157 ATGGGAAGGTCTCCTTGTTGTGAGAAAGCACACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGATAGACTCATATCTTATATTCGTGCTCATGGTGAAGGAAGTTGGCGTTCTCTCCCCAAAGCAGCTGGTCTTCTCCGATGCGGCAAGAGTTGCCGTCTCCGGTGGATCAACTACCTTCGTCCTGACCTTAAACGTGGCAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGTAACAAGTGGTCTTTGATAGCAGCAAGATTGCCAGGAAGAACAGACAATGAAATAAAGAATTACTGGAACACTCATATAAGGAGAAAGCTTATGAGCAGAGGAATTGACCCTGCAACTCACAGGCATCTTAATGATGCTGAGAATCGTGTTCAAGATCATGAAGTTCAAACATCTGTTGCAGCAACCAACACAATATCTTTTGCTTCATCAGCTTCTGTTGCTGTTGTTAAACAAGAACAAGATCCTAGTATTACTAGTAAGTCAAGCATGTTTGAGGTTGTGAGTAATAATAAAGATGGCAGAGGAACTTTGTTAGAACGTTGCCCTGACTTGAATCTTGAGCTAACAATTAGTCCTCCCCGTATGAATGAGCCTGATCAACCATTCAAGAATATGGATAGAAGCCTTTACTTTGGTTGCAATTTGGGTATGCAGAATAGCAATGATTATAGCTGTGGGGATGGTAGTGACATTGGCAACACCACTAGTAGTGGGAAGAGAAATAGTACTAGTACTGCTTATGATTTCTTGGGCTTGAAAACTGATGTTTGGGATTACAGAAGACTGAAAATGAAATGA 837 0.4122 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIRRKLMSRGIDPATHRHLNDAENRVQDHEVQTSVAATNTISFASSASVAVVKQEQDPSITSKSSMFEVVSNNKDGRGTLLERCPDLNLELTISPPRMNEPDQPFKNMDRSLYFGCNLGMQNSNDYSCGDGSDIGNTTSSGKRNSTSTAYDFLGLKTDVWDYRRLKMK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0157 278 CDD SANT 69 112 IPR001005 -
Lal1g0157 278 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal1g0157 278 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal1g0157 278 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 243 - -
Lal1g0157 278 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 243 - -
Lal1g0157 278 CDD SANT 16 61 IPR001005 -
Lal1g0157 278 SMART sant 66 114 IPR001005 -
Lal1g0157 278 SMART sant 13 63 IPR001005 -
Lal1g0157 278 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal1g0157 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal1g0157 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal1g0157 278 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lal1g0157 278 Gene3D - 14 66 - -
Lal1g0157 278 Gene3D - 69 144 - -
Lal1g0157 278 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0157 Lal-Chr1 1008605 1010137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0157 1 278 MYB Transcription Factor Family AT4G38620 55.986 3.14e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g0157 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0157 K09422 - pop:7494250 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0157 1 1008605 1010137 Lal1g0157 1 1008605 1010137 ECH
Lal1g0157 1 1008605 1010137 Lal2g0097 2 598344 599771 ECH
Lal1g0157 1 1008605 1010137 Lal2g0097 2 598344 599771 LSH
Lal1g0157 1 1008605 1010137 Lal9g0117 9 768831 770267 LSH