Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0147 ATGGGTCGCGTCTTTCTCTTTCTCATTATTATCAGCTTTGTTGCATTCTCTTTTCTTTCAGATTTGAACTTCACTGTAACATTCAGCCTGGTCGTTGCAGAGGTACAATCAACGTCGTTCAAGATCGTGAACAAGTGCCACCACACGATATGGCCGGGACTACTCTCTGGCGCCACCTCACCGCCGCTCCCCACCACCGGCTTCGCTCTTCGCAGTGGCAAGTCCAAGACCATCAAAATCCCCAAATCTTGGTCGGGTCGGCTATGGGCTCGGACCCTCTGCGGCCTAGGCTCCGATGGAATGTTCTCATGCGTTACCGCCGATTGCGGCTCCGGCAAAGTAGAGTGTGCCGGTGGCGGCGCCAAACCTCCTGCAACGCTGGCGGAGCTCACACTTAACGGCGCCGACGGGTTGGACTTCTACGACGTGAGTTTGGTTGACGGTTACAACCTTCCGATGCTAATCGTGGCGAAGGGAGGCACCAGGGGTGGGTGCAGCCCCACGGGGTGCTTGGTAGAGCTCAACGGCGCTTGCCCGAAGGACCTCAGGGTGGCGCGTGTGAATGGGACTAGAGAAAGTGTCGCATGCAGGAGCGCGTGTGAGGCTTTTGGTGACCCAAGGTATTGTTGCAGTGAAGCTTACTCAACGCCTGACACGTGTGGTCCTTCTGTTTACTCACAATTCTTTAAGTTTGCTTGCCCACGCGCATATAGCTACGCGTATGATGACAAGACTAGCACCTACACGTGTGCCTCCGCTAACTACTTGATCATATTTTGCCCCTTACCCTATACCAGCCAAAAAGTGCTGGGAGCGCGGAAAGATGGCGCACCGCTTCCTCTCCCATGTGAGCTCTTCATGATGTCTCCCCTCCTCACTATTTTTTCTTTGAACTATCAAATGACTATGCTGATCATGCAGGACATGGAGGATATATCATATAGGAAAGGAACACTGTAA 960 0.5312 MGRVFLFLIIISFVAFSFLSDLNFTVTFSLVVAEVQSTSFKIVNKCHHTIWPGLLSGATSPPLPTTGFALRSGKSKTIKIPKSWSGRLWARTLCGLGSDGMFSCVTADCGSGKVECAGGGAKPPATLAELTLNGADGLDFYDVSLVDGYNLPMLIVAKGGTRGGCSPTGCLVELNGACPKDLRVARVNGTRESVACRSACEAFGDPRYCCSEAYSTPDTCGPSVYSQFFKFACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSQKVLGARKDGAPLPLPCELFMMSPLLTIFSLNYQMTMLIMQDMEDISYRKGTL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0147 319 Pfam Thaumatin family 44 261 IPR001938 -
Lal1g0147 319 PRINTS Pathogenesis-related protein signature 39 51 IPR001938 -
Lal1g0147 319 PRINTS Pathogenesis-related protein signature 87 98 IPR001938 -
Lal1g0147 319 PRINTS Pathogenesis-related protein signature 139 155 IPR001938 -
Lal1g0147 319 PRINTS Pathogenesis-related protein signature 251 260 IPR001938 -
Lal1g0147 319 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 28 272 - -
Lal1g0147 319 SUPERFAMILY Osmotin, thaumatin-like protein 39 261 IPR037176 -
Lal1g0147 319 Gene3D Thaumatin 38 261 IPR037176 -
Lal1g0147 319 SMART tha2 40 261 IPR001938 -
Lal1g0147 319 ProSitePatterns Thaumatin family signature. 100 116 IPR017949 -
Lal1g0147 319 CDD TLP-PA 39 260 - -
Lal1g0147 319 PANTHER OS03G0233200 PROTEIN 28 272 IPR001938 -
Lal1g0147 319 ProSiteProfiles Thaumatin family profile. 37 261 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0147 Lal-Chr1 956211 959554 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0147 18 277 Receptor kinase-like Gene Family AT5G38280 46.947 1.70e-82 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0147 - - ccaj:109798931 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0147 1 956211 959554 Lal1g0147 1 956211 959554 ECH
Lal8g0531 8 3628132 3630171 Lal1g0147 1 956211 959554 ECH
Lal10g0887 10 16373019 16375674 Lal1g0147 1 956211 959554 ECH
Lal1g0147 1 956211 959554 Lal15g1517 15 17306836 17309531 ECH
Lal1g0147 1 956211 959554 Lal23g1472 23 15065409 15067143 ECH