Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0145 ATGGGTTCTGAGAGAGTAACTGGGAAGGTGAAGTGGTTCAATGATACCAAGGGATTCGGATTCATTACCCCTGATGATGGTGGTGAAGAACTCTTCGTTCATCAATCTCACATTAAATCTGATGGATTTCGATCCCTCGCTGAAGGTGAATCTGTTGAGTTTTTAATTGATGCTGATTCTGATGGCCGATCTAAGGCTGTTGATGTCACCGGTCCTGATGGTGCTAATGTCCAGGGTAGCCGACGCGGTGGTGGCGGTGGAGGTAGCTATGGTGGTGGTGGCGGTGGAGGTAGCTATGGTGGTGGCGGTGGTTATGGCGGTGGTCGTGGTGGTGGAGGCTATGGTGGTCGTGGTGGAAGAGGAGGCGGTGGATATGGTGATGGAGGCTATGGAGGTGGTGGTGGTGGCGGCGGTGGAGGTTGTTATAGCTGTGGTGAGTCTGGTCACATTGCTAGGGAGTGTCCTCAAGGAGGTGGCGGTGGTGGAGGAAGGTACGGAGGTGGCGGTGGCGGTGGAAGGTATGGAAGCGGGGGTGGCGGTGGAGGTGGCGGCGGTGGCTGTTACAACTGTGGGGAATCTGGCCATTTCGCAAGAGATTGCACAACTTCTGGTGGTCGTTGA 621 0.5507 MGSERVTGKVKWFNDTKGFGFITPDDGGEELFVHQSHIKSDGFRSLAEGESVEFLIDADSDGRSKAVDVTGPDGANVQGSRRGGGGGGSYGGGGGGGSYGGGGGYGGGRGGGGYGGRGGRGGGGYGDGGYGGGGGGGGGGCYSCGESGHIARECPQGGGGGGGRYGGGGGGGRYGSGGGGGGGGGGCYNCGESGHFARDCTTSGGR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0145 206 ProSiteProfiles Zinc finger CCHC-type profile. 187 200 IPR001878 GO:0003676|GO:0008270
Lal1g0145 206 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lal1g0145 206 ProSiteProfiles Zinc finger CCHC-type profile. 141 156 IPR001878 GO:0003676|GO:0008270
Lal1g0145 206 SUPERFAMILY Retrovirus zinc finger-like domains 125 160 IPR036875 GO:0003676|GO:0008270
Lal1g0145 206 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lal1g0145 206 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lal1g0145 206 Gene3D - 2 83 IPR012340 -
Lal1g0145 206 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lal1g0145 206 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lal1g0145 206 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lal1g0145 206 MobiDBLite consensus disorder prediction 63 89 - -
Lal1g0145 206 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lal1g0145 206 Pfam Zinc knuckle 186 201 IPR001878 GO:0003676|GO:0008270
Lal1g0145 206 Pfam Zinc knuckle 140 156 IPR001878 GO:0003676|GO:0008270
Lal1g0145 206 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 202 - -
Lal1g0145 206 Gene3D - 137 164 - -
Lal1g0145 206 Gene3D - 183 206 - -
Lal1g0145 206 SMART csp_8 7 72 IPR011129 GO:0003676
Lal1g0145 206 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lal1g0145 206 SUPERFAMILY Retrovirus zinc finger-like domains 168 201 IPR036875 GO:0003676|GO:0008270
Lal1g0145 206 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Lal1g0145 206 SMART c2hcfinal6 186 202 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0145 Lal-Chr1 943415 944035 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lal1g0145 CSD 1.5e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0145 - - rcu:107262322 161.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0145 1 943415 944035 Lal1g0145 1 943415 944035 ECH
Lal1g0145 1 943415 944035 Lal2g0088 2 548180 548764 LSH
Lal1g0145 1 943415 944035 Lal9g0115 9 758636 759250 LSH