Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0136 ATGGCATCGTCATTCGTCAAACTCGATGATTCCCCAATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAGCAACTGACGAGTTAAAGGACCGGTGCCAGAAACTATTTAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGAATATAATGGGGAAATTTCCTTTGCTGATTCATTAGAAGCATTTGGCGGTGGCCAGGATGACCCTGTTAGCGTATCAATTGGAGGGCCGGTCATATCTAAGTTTATTACCACACTGCGTGAGCTAGCTAGTTTTAAAGAGCTTCTCCGTTCACAGGTAGAGCACGTGTTGATTGACCGGCTGATGGAGTTTATGACTGTTGATTTGCAAGATGCGAAGGATTCTCGCCGCCGTTTTGACAAAGCTGTGAATTCTTATGATCAGTCACGAGAGAAGTTTGTGTCTTTGAAGAAAAATACGCCGGGAGACGTTGTCGCTGAATTAGAAGAGGTGAACTCGCTCATGAATATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCTGTTAGTGCAATAATGGATGCTCATCTGAGATACTTTAAGTTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTTCTTACATATGCTCAACAATCTAAAGAAATGGCTAATATCGAGCAAGATAAGCTTGCAAAACGAATCCAGGAATACCGAACTCAGGCCGAGCTGGAAAATATACGAGCTTCTAGCAATACAGAACCCTTGCCAAATGCTGATAGCACCCATGTTGTAGGCTTGAACTCTTACAAAAGCTTTGAAGCAGGGATGCAACCTGCAACCAAAGGGGAAGTTCAAACAGTTAAACAGGGCTATCTGTTGAAACGATCATCAAGCTCACGTGGAGATTGGAAGCGGAGGTTCTTTGTACTTGATAACCGAGGGAGTTTATATTATTACAGAGTGAAAGGAGGCAAACCCATGGGCTCTCAGTCATATCATTATACTCGTTCTGGTGAACAAAACAGTGGCATGTTTGGTAGATTCCGTTCAAGGCACAACAGGGCAGCATCACTAAATGAGGATATTTTGGGTTGTTGTGCAGTTGATCTGTGCACATCTACTATAAAGATGGATGCAGAGAATACAGATCTACGACTTTGCTTCCGTATAATCTCGCCCTCAAAGTCATATACACTGCAGGCTGAAAATGAAACTGATAGGATGGACTGGGTAAACAAAATAACTGGAGCCATCACAACGCTTTTTAATTCTCAGTTTCTTCAGCCTCATTATGGTAGATTACATTTTGAAAATAAAAACTCAGCAGGTGGTGCTTCCTTGACTAGCCAATCAGAGGACAGTAATAGATCTTTGATGGATGGCATATATTCCAAGGAAGTGGTTAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAATGCGGTGCTCCTGAACCAGAATGGGCATCTTTAAATCTTGGCATATTGCTGTGCATTGAATGCTCTGGGGTACATCGAAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTCAAGGTTTGGGAACCTGCTGTTTTAGAGTTGTTTGATAACTTGGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACTTGATGATGAAAGAGTAGTTGAATCAAATGCACCTATGAAACCATGCTCCACAGATGCCTTCCAATACAAAGAAAAGTACATCCAAGCAAAGTATGTAGAGAAATCACTAATCATTAGAGAAGAGGATATACCCGGGAATCCTTCACTTTCCATAAGGATCTGGCAAGCAGTTCAGGCTATCAATGTAAAAGAAGTATATCGCCTTATAGTTACATCAAATTCAAATCTGATAAACATGTCATATGATGACGTGCTTCACCATGCTGATGGTGAAGATTTGAACTTAGGACCTATAAATGAGCATCAGCATGATCCTGAAGCCTGTCTGAGAGTTAAAGATACTAATGAGACCGAGAGGTGTTTTCGTGGCTGGTCATTATTACATCTGGCATGTCATTCTGGCAGTCCACTAATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGACTATCATGGAAGGACCCCATTGCACCATTGCATTTCCAGTGGGAAGAATCCATTGGCGAAGTTTCTACTGAGAAGGGGAGCTAAGCCATCAGTTAAAGATGCTGGTGGACTCACAGTACTTGAAAGAGCAATGGAGATGGGAGCAATATCTGACGAAGAGCTATTTATCAAGCTTGCTGAATGCCAGTAA 2295 0.4157 MASSFVKLDDSPMFQKQLFSLEEATDELKDRCQKLFKGCKKFMTALGEEYNGEISFADSLEAFGGGQDDPVSVSIGGPVISKFITTLRELASFKELLRSQVEHVLIDRLMEFMTVDLQDAKDSRRRFDKAVNSYDQSREKFVSLKKNTPGDVVAELEEVNSLMNIEVKKKYEFLESVSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEMANIEQDKLAKRIQEYRTQAELENIRASSNTEPLPNADSTHVVGLNSYKSFEAGMQPATKGEVQTVKQGYLLKRSSSSRGDWKRRFFVLDNRGSLYYYRVKGGKPMGSQSYHYTRSGEQNSGMFGRFRSRHNRAASLNEDILGCCAVDLCTSTIKMDAENTDLRLCFRIISPSKSYTLQAENETDRMDWVNKITGAITTLFNSQFLQPHYGRLHFENKNSAGGASLTSQSEDSNRSLMDGIYSKEVVSVSKILRGIPGNDKCAECGAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPAVLELFDNLGNAYCNSIWEGLLLLDDERVVESNAPMKPCSTDAFQYKEKYIQAKYVEKSLIIREEDIPGNPSLSIRIWQAVQAINVKEVYRLIVTSNSNLINMSYDDVLHHADGEDLNLGPINEHQHDPEACLRVKDTNETERCFRGWSLLHLACHSGSPLMVELLLQFGADVNMCDYHGRTPLHHCISSGKNPLAKFLLRRGAKPSVKDAGGLTVLERAMEMGAISDEELFIKLAECQ 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0136 764 ProSiteProfiles Ankyrin repeat profile. 704 736 IPR002110 GO:0005515
Lal1g0136 764 Pfam BAR domain of APPL family 8 216 - -
Lal1g0136 764 ProSiteProfiles PH domain profile. 278 412 IPR001849 -
Lal1g0136 764 Gene3D - 272 422 IPR011993 -
Lal1g0136 764 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 760 - -
Lal1g0136 764 SMART ANK_2a 704 733 IPR002110 GO:0005515
Lal1g0136 764 SMART ANK_2a 671 700 IPR002110 GO:0005515
Lal1g0136 764 SUPERFAMILY BAR/IMD domain-like 8 301 IPR027267 -
Lal1g0136 764 Pfam PH domain 280 411 IPR001849 -
Lal1g0136 764 CDD ArfGap 465 580 - -
Lal1g0136 764 Pfam Ankyrin repeats (3 copies) 664 735 IPR002110 GO:0005515
Lal1g0136 764 SUPERFAMILY PH domain-like 279 422 - -
Lal1g0136 764 SMART arf_gap_3 461 593 IPR001164 GO:0005096
Lal1g0136 764 Gene3D Arfaptin homology (AH) domain/BAR domain 7 237 IPR027267 -
Lal1g0136 764 CDD BAR_SFC_plant 16 201 IPR035670 -
Lal1g0136 764 SUPERFAMILY ArfGap/RecO-like zinc finger 464 586 IPR037278 -
Lal1g0136 764 SMART PH_update 279 414 IPR001849 -
Lal1g0136 764 ProSiteProfiles Ankyrin repeat region circular profile. 704 735 - -
Lal1g0136 764 SMART 5bar 13 204 IPR004148 GO:0005515|GO:0005737
Lal1g0136 764 ProSiteProfiles ARF GTPase-activating proteins domain profile. 461 593 IPR001164 GO:0005096
Lal1g0136 764 SUPERFAMILY Ankyrin repeat 662 759 IPR036770 -
Lal1g0136 764 PRINTS HIV Rev interacting protein signature 473 492 IPR001164 GO:0005096
Lal1g0136 764 PRINTS HIV Rev interacting protein signature 492 509 IPR001164 GO:0005096
Lal1g0136 764 PRINTS HIV Rev interacting protein signature 515 536 IPR001164 GO:0005096
Lal1g0136 764 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Lal1g0136 764 ProSiteProfiles Ankyrin repeat region circular profile. 671 702 - -
Lal1g0136 764 Gene3D Arf GTPase activating protein 445 592 IPR038508 -
Lal1g0136 764 Gene3D - 653 760 IPR036770 -
Lal1g0136 764 Pfam Putative GTPase activating protein for Arf 465 585 IPR001164 GO:0005096
Lal1g0136 764 PANTHER CENTAURIN/ARF 3 760 IPR045258 GO:0005096
Lal1g0136 764 Coils Coil 213 233 - -
Lal1g0136 764 CDD PH_ACAP 281 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0136 Lal-Chr1 887762 897973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0136 473 580 C2H2 Transcription Factor Family AT4G21160 40.367 5.15e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0136 K12489 - gmx:100796006 1325.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0136 1 887762 897973 Lal2g0084 2 500364 518586 LSH