Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0121 ATGGCCAAGTCCAGCAAGAAATCCGCTTCCAAAATTGATGCTGCTCCAGCTGCAGCAGTTCCACCTTCCAAGTCTGCCAAAAAGAGCAAGAGGCAGCCAGAAGATGAAATTGAGAAGCAGGTGAGTGCAAAGAAGCAGAAGGTAGAGGTGGTCGCCCAAAAGCAAAAGAAGGAAGCAAAGCTGCAAAAGGTTAAGAAGGAAAGTAGTTCAGATGATTCATCATCAGAATCTGAAGATGAGAAACCTGCTGCAAAGGTTGTTGTTCCTTCAAAAAAGCAACCAGCTGCTGTGAAATCAAAGGTGCAGAAGAAGGAAAGTAGTTCTGATGATTCATCATCAGAATCTGAAGATGAGAAACCTGCTGCAAAGGTTGTTGTTCCTTCAAAAAAGCAACCAGCTGCTGTGAAACCGAAGGTGCAGAAGAAGGAAAGTAGTTCTGATGATTCATCATCAGAATCTGAAGATGAGAAACCTGCTGCAAAGGTTGTTGTTCCTTCAAAAAAGCAACCAGCTGTTGTGAAACCAAAGGTGCAGAAGAAGGAAAGTAGTTCTGATGATTCATCATCTGAATCTGAAGATGAGAAACCTGCTGCAAAGGTTGTTGTTCCTTCAAAAAAGCAACCAGCTGCTGAGAAACCAAAGGTGCAGACGAAGGAGAGTAGTTCTGATGATTCCTCTTCAGAATCAGAAGATGAGAAACCTGCTGCAAAGAAAGGCAAGCCAGCGCCCCCTTCTAGCTCTTCTGATGAATCATCTGATGAGGATGAAGCTCCAAAGTCCAAGGTGGCTGCTGCTAAGAATGGTTCTGCTCCCACAAAGAAGAATGTGCAGTCTAGTGATAGCTCTGAGTCGTCTGAGTCTGATGACAGTTCTGATGAGGATAATGCAACTAAACCTGCCAAGAAATTGCCTGCTGCTGCTGGTGGTAAGAAATTGCCTGCGAAGAAGGCTGAATCAGACTCAACCTCTGACAGTAGTTCAGATGAAGATGATGATGCAAAGCCTACTGTAACTGCTGTGTCCAAGGCTGCTGCTCCAAAGAAAGAAGTTGACAGCTCTGATTCAGATGATAGCAGCTCCAATGAAGATGATGATTCATCTGATAGCGATGCTGATGATAAAAAGAAGAATGCTAAAGCTTCTAATGGTATCAAGAAACCCGCACCTGTTGTGAAGGCAGTGAAAGTTGAGTCCAGTGATAGCTCATCAGATGATGAGGAGAAGATGGATGTTGATGAAGATGATAGCTCTGATGAAAGTGACGAGAAGCCTCAAAAGAAAATTGTACAGTCTTGTATGTTAATTTCATTGCATATCTTTTCACTGCAGCCTGTAAAAGCCTCAAAAGAAAGCTCTGATGATAGTTCAGAGAGTTCAGAGGATGAAGAGGATGAAAATGACAAGAACCATTCCAAAACTCCCCAGAAAAGTGTTAAGGATGTGGAGATGGTTGATGCCTCATCTGGAAAGAAAGCTCCTAATACCCCGGCAACACCGAAAGCAGATAATGGTGGATCAAAGACACTATATGTAGGCAACCTGTCATATAGTGTGCAGCGGTCCGATGTGGAATATTTCTTCCAAGAATGTGGAGAAGTCGTTGATGTTCGCCTCGCAGTAGATGAGGATGGGAATTTTAAAGGCTTTGGACATGTTGAATTTGCAACATCAGAGGCAGCCCAGAAGGCGCTTGAGTTGCGTGACCAAGAACTGTTGAATCGTCCTGTTCGGCTTGATTTAGCTCGTGAAAGGGGTGCATATACTCCCAACAGTGGGCCTAACAGCGGTAACTGGAACAACTCATCCCAGACTGGTGGAAGAGGCCAGTCTCAGACATTATTTGTGAGGGGTTTTGATAGATCTCTTGGAGAAGATGAGGATCAGCTTTGTTCTTTTCAGTTAAAATCTAGTCTGGAGGAGCATTTTGGTACATGCGGGCAGATTACAAGGATATCTGTGCCAAAAGATTATGACTCTGGTGAAATTAAGGGGTTTGCTTACTTGGACTTCAAAGATGGTGAAAGCTTGAGCAAAGCTCTAGAACTGCACCAGTCTGAACTTGGAGGTTATCCATTATCAGTTGATGAAGCCAAACCTAGAGATAATCAAAGTTCTGGTGGTAGAGGTGCAGGTAGGAGTGGTGGCCGCTTTGGTGGTGGAAGGGGAGGTCGATTTGATGGAAGAGGCAGCGGTGGTCGATTCGGCGGTGGTGGAAGAAGTGGTGGTGGCCGATTTGGTGGCGGCGGTAGAAGTGGTGGTGGTCGATTTGGCGGTGGTCGTGGAGGACCAAGTAGACCAAGTTTTGCTGCAGAAGGGAAGAAGACCACTTTCGCTGATGAGGATTAG 2346 0.4501 MAKSSKKSASKIDAAPAAAVPPSKSAKKSKRQPEDEIEKQVSAKKQKVEVVAQKQKKEAKLQKVKKESSSDDSSSESEDEKPAAKVVVPSKKQPAAVKSKVQKKESSSDDSSSESEDEKPAAKVVVPSKKQPAAVKPKVQKKESSSDDSSSESEDEKPAAKVVVPSKKQPAVVKPKVQKKESSSDDSSSESEDEKPAAKVVVPSKKQPAAEKPKVQTKESSSDDSSSESEDEKPAAKKGKPAPPSSSSDESSDEDEAPKSKVAAAKNGSAPTKKNVQSSDSSESSESDDSSDEDNATKPAKKLPAAAGGKKLPAKKAESDSTSDSSSDEDDDAKPTVTAVSKAAAPKKEVDSSDSDDSSSNEDDDSSDSDADDKKKNAKASNGIKKPAPVVKAVKVESSDSSSDDEEKMDVDEDDSSDESDEKPQKKIVQSCMLISLHIFSLQPVKASKESSDDSSESSEDEEDENDKNHSKTPQKSVKDVEMVDASSGKKAPNTPATPKADNGGSKTLYVGNLSYSVQRSDVEYFFQECGEVVDVRLAVDEDGNFKGFGHVEFATSEAAQKALELRDQELLNRPVRLDLARERGAYTPNSGPNSGNWNNSSQTGGRGQSQTLFVRGFDRSLGEDEDQLCSFQLKSSLEEHFGTCGQITRISVPKDYDSGEIKGFAYLDFKDGESLSKALELHQSELGGYPLSVDEAKPRDNQSSGGRGAGRSGGRFGGGRGGRFDGRGSGGRFGGGGRSGGGRFGGGGRSGGGRFGGGRGGPSRPSFAAEGKKTTFADED 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0121 781 Gene3D - 597 733 IPR012677 -
Lal1g0121 781 Gene3D - 443 590 IPR012677 -
Lal1g0121 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 583 IPR000504 GO:0003723
Lal1g0121 781 MobiDBLite consensus disorder prediction 211 238 - -
Lal1g0121 781 SUPERFAMILY RNA-binding domain, RBD 496 609 IPR035979 GO:0003676
Lal1g0121 781 MobiDBLite consensus disorder prediction 690 781 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 585 609 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 465 486 - -
Lal1g0121 781 CDD RRM1_NUCLs 508 584 IPR034349 -
Lal1g0121 781 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 611 699 IPR000504 GO:0003723
Lal1g0121 781 MobiDBLite consensus disorder prediction 174 200 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 443 506 - -
Lal1g0121 781 SUPERFAMILY RNA-binding domain, RBD 612 730 IPR035979 GO:0003676
Lal1g0121 781 SMART rrm1_1 508 579 IPR000504 GO:0003723
Lal1g0121 781 SMART rrm1_1 612 695 IPR000504 GO:0003723
Lal1g0121 781 MobiDBLite consensus disorder prediction 270 284 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 136 162 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 588 609 - -
Lal1g0121 781 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 356 775 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 313 336 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 491 506 - -
Lal1g0121 781 Coils Coil 47 67 - -
Lal1g0121 781 PANTHER BNAA08G02930D PROTEIN 356 775 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 98 124 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 403 419 - -
Lal1g0121 781 MobiDBLite consensus disorder prediction 1 428 - -
Lal1g0121 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 636 692 IPR000504 GO:0003723
Lal1g0121 781 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 576 IPR000504 GO:0003723
Lal1g0121 781 MobiDBLite consensus disorder prediction 27 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0121 Lal-Chr1 801002 806832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0121 499 681 Eukaryotic Initiation Factors Gene Family AT4G34110 27.322 9.35e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0121 K11294 - gmx:100779929 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0121 1 801002 806832 Lal9g0098 9 623085 627729 LSH