Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0116 ATGGCCACTTTCTGTACCATACTCTCATGCTGCCTCCTTATCATTACTACCATGTCAGTCTCCACTGTTGCCTCCATAAGAGAATATTCCGGCATGGAGGCACAACAACAGGAGGCTGACATAGTGAAGAACTTGCCGGGACAGCCAGCGGTGAAATTCAGACACTATGCTGGTTATGTGAAGCTAAGACCAGATGAAGAGAAGGCATTGTTCTACTGGTTCTTTGAAGCTCAAGAACAACCCTCACATAAGCCTCTTGTGCTTTGGCTTAATGGAGGACCTGGTTGCTCGTCCATTGCCTATGGAGCTGCACGAGAGCTTGGTCCATTTCTTGTTAAAGACAAAGAAGGACTCACACTTAACGAATTCTCTTGGAACAAAGTTGCAAATATCATATTCTTGGAGTCACCAGTTGGTGTTGGTTTTTCTTACACAAACATCTCCAAAGATTTGCATGAACTTGGGGATCGAGTTTCTGCTATTGATAACTATGCCTTTTTGATTGGTTGGTTCAAAAGGTTCCCAAGCTTCACATCCCATCACTTTTATATTGCTGGAGAGAGCTATGCAGGCCATTATGTTCCACAGCTTGCTGAACTTATCTATGAAGGAAACAGACATACCAAAAAGAGCACTCACATAAATTTCAAGGGATTCATGATTGGAAATGCTGTGATCAATGATCTTACAGATACCAATGGGATGATTGATTATGCTTGGAGCCATGCCATCATCTCAGATGAAGTATACTATGGGATAATCAATGATTGTGACTTTAGAGAAGAAAATCAAACAGAGGCTTGTGATTTGCATGTTACAGGGCTATTACAAGCTTACTCAGATATTGACATATATAGCATTTACTCACCCATTTGTCTCAATAAATATCAAAGAGCAGTTTCACCCAAACTTCTTGTTGCTCCTCATCTTCTCACACGACATGAGCTGTGGCATACGCTACCATCGGGATACGATCCCTGTACAGAGGATTATGTGGCCAAATATTTCAATGATAAGGATGTCCAGAAGGCCCTACATGCCAATATTACCAACTTGTCATATCCCTATACCCTTTGCAGCTCTGTAATTCAGAAATGGAATGACTCACCAAACACAGTCCTGCCAATTATTGAAAAGCTCTTACATGCTGGCTTACGCATATGGATATACAGTGGTGACACAGATGGTAGGGTACCAGTGACATCAACAAGATATAGCATAAAGAAGATGGGGTTGAAAGTAAAGAAAGGGTGGAGAGCATGGTTTCATAAGAGTGAAGTTGCAGGGTGGATGGAAGAGTATGAAGGTGGTCTTACATTTGTAACCATTAGAGGTGCTGGTCATCAAGTTCCAGTCTTTGCACCTCACCAATCCCTTTCTCTCTTCACTCATTTCCTCTCTGCTCAAACACTCCCTTCTTCTCGTTTCTAG 1431 0.4207 MATFCTILSCCLLIITTMSVSTVASIREYSGMEAQQQEADIVKNLPGQPAVKFRHYAGYVKLRPDEEKALFYWFFEAQEQPSHKPLVLWLNGGPGCSSIAYGAARELGPFLVKDKEGLTLNEFSWNKVANIIFLESPVGVGFSYTNISKDLHELGDRVSAIDNYAFLIGWFKRFPSFTSHHFYIAGESYAGHYVPQLAELIYEGNRHTKKSTHINFKGFMIGNAVINDLTDTNGMIDYAWSHAIISDEVYYGIINDCDFREENQTEACDLHVTGLLQAYSDIDIYSIYSPICLNKYQRAVSPKLLVAPHLLTRHELWHTLPSGYDPCTEDYVAKYFNDKDVQKALHANITNLSYPYTLCSSVIQKWNDSPNTVLPIIEKLLHAGLRIWIYSGDTDGRVPVTSTRYSIKKMGLKVKKGWRAWFHKSEVAGWMEEYEGGLTFVTIRGAGHQVPVFAPHQSLSLFTHFLSAQTLPSSRF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0116 476 Pfam Serine carboxypeptidase 47 467 IPR001563 GO:0004185|GO:0006508
Lal1g0116 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Lal1g0116 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Lal1g0116 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Lal1g0116 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185|GO:0006508
Lal1g0116 476 SUPERFAMILY alpha/beta-Hydrolases 37 472 IPR029058 -
Lal1g0116 476 Gene3D - 327 364 - -
Lal1g0116 476 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 35 31 469 - -
Lal1g0116 476 ProSitePatterns Serine carboxypeptidases, histidine active site. 438 455 IPR033124 GO:0004185
Lal1g0116 476 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Lal1g0116 476 Gene3D - 373 467 - -
Lal1g0116 476 Gene3D alpha/beta hydrolase 36 294 IPR029058 -
Lal1g0116 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 469 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0116 Lal-Chr1 782654 786459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0116 332 471 Calmodulin-binding Proteins AT2G22960 30.496 9.11e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0116 K16297 - gmx:100799746 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0116 1 782654 786459 Lal9g0091 9 579921 585405 LSH