Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0113 ATGGGTTTTGCCAGTAGTGGAAGAAAAAGGAAAACAAATGCCAGGAACTCAATTTCTTATAAAGTGGGTGATGTTGAATGGACCAATAAGATTCCAGAGTGTCCAGTATATTACCCATCACAGAAGGAGTTTCATGATCCTTTCGCTTATCTACATAAGATTCTTCCAGAAGCATCAAGTTTTGGGATATGCAAAATTGTTTCTCCTATAATTGCATCTATTCCTGCTGCTGTTGTCTTAACCAAAGAGAAGAAGGATTTCAAGTTTGAAACTAATGTACAACCCCTTCGGCTTTCTGAATGGAATGAGAAAGATAAGATCACCTTTATGAAAGGAAGAAAATACACATATCAGGAATTTGAGGCTCTAGCAAACAAGGCCTTTCTTAGTCGATTTTACAGTTCTAGGAGTCTCTCTTCTTCATATATTGAAAAGGAGTTCTGGCACGAAATGGCACATGGCCATAAAGGTACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCCAAAGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCCACAATCCACATTGCGCTTAGTTGACAAGGGAATTCCGGGAATTACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTACTTATATAGCATAAATTATCATCATTCAGGTGCAAATAAAATTTGGTATGGCATACCTGCCCATGAAGCCTCTCAATTTGAAGATATTGTCCTACATAATGTGTATTGCAAAAATATCTTATCAAAACATAGAGAGGATAAAGCTTTCCAACTACTAGCATATAAAACAACCATGTTCCCTCCAGATATCTTCCTACAACATGATGTGCCAGTTTACAAGGCTGTTCAGAATCCAGGAGAGTTTGTCATTACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTAGGGGCTGAAGCTAGTAAGCGTTACGCGAATCTCAGAATGTTTCCTATTATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCAACTTTACAAATTGTCAAAAGACAGAGGTTCTAAGAACTTGGCATCTAATCATGCTACAGTCCTGTCTTTTGTGCATCTTATACAATTTTATAAGAAGACTCTCTTGCAACTGAAAGACATTGCATCAAGGAAGTGCACATGTGGTAGAGAATATATCGTTTTTAAGCGGGAAGACATGTTGGCAATGGAAGATGCTGCTACTAAGTTTGAAGAGGAAGGGGGGATGTTGCAGTTGTCGGGGTTTGAGCCTAGGTGCGCTTACACTTTATGTCTCACAACTTTATCAACTGAGTTGGTTGTTAGGGACCATTTGTATCATTTTATTGTTTGA 1440 0.3854 MGFASSGRKRKTNARNSISYKVGDVEWTNKIPECPVYYPSQKEFHDPFAYLHKILPEASSFGICKIVSPIIASIPAAVVLTKEKKDFKFETNVQPLRLSEWNEKDKITFMKGRKYTYQEFEALANKAFLSRFYSSRSLSSSYIEKEFWHEMAHGHKGTVEYGVNVEGSAFSCDPKDKLGRSKWNLKNFSRLPQSTLRLVDKGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGIPAHEASQFEDIVLHNVYCKNILSKHREDKAFQLLAYKTTMFPPDIFLQHDVPVYKAVQNPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAEASKRYANLRMFPIIPYEELLCKEAMQLYKLSKDRGSKNLASNHATVLSFVHLIQFYKKTLLQLKDIASRKCTCGREYIVFKREDMLAMEDAATKFEEEGGMLQLSGFEPRCAYTLCLTTLSTELVVRDHLYHFIV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0113 479 Pfam jmjN domain 35 67 IPR003349 -
Lal1g0113 479 ProSiteProfiles JmjN domain profile. 34 75 IPR003349 -
Lal1g0113 479 SMART JmjN_1 33 69 IPR003349 -
Lal1g0113 479 SMART cupin_9 180 350 IPR003347 -
Lal1g0113 479 Pfam JmjC domain, hydroxylase 210 333 IPR003347 -
Lal1g0113 479 Gene3D Cupin 34 395 - -
Lal1g0113 479 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 12 408 - -
Lal1g0113 479 SUPERFAMILY Clavaminate synthase-like 174 376 - -
Lal1g0113 479 ProSiteProfiles JmjC domain profile. 180 350 IPR003347 -
Lal1g0113 479 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0113 Lal-Chr1 770520 773029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0113 31 382 JUMONJI Transcription Factor Family AT2G34880 34.466 2.51e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal1g0113 JmjC 6.6e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0113 - - ahf:112732604 617.461