Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0110 ATGGATTATACAGCTGCAAGAAAGACTCAAAAGGCTGGCCGAGAAAAGTTGAGGAGGGATCGACTCAATGAACAGTTTGAAGAACTGGGCAACGTTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAAGTGATACAATTCAATTGCTGAATGACCTTACTTCTCAAGTTAGCAAGCTCAAGGACGAATATACTGCACTAAATGAAGAATCTCGTGAATTGACTCAGGAGAAAAATGATCTCAGAGAGGAGAAGGCTTCTCTTAAATCGGATATAGATAACTTGAATAATCAGTACCAGCAGCGACGCAGGACTGTGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCGTATCCAATGCCAATGCCAGTTCCTCCTGGTCCGATTCCCATGCAGTTTTACCCCCACTTCGCTAATCAAAATCCTCCAGTCTTCCTCAATCCCTGTTCAACTTATGTTCCTTATATAGCCCCGAACAGTGTTGTTGAACAACAATCCACCCAGTACATAGTGCCACCAGTTCATCAAAGTAGTCAGTCCCAGGTATCAAGCAAACTGGACTCCAAACACAAATCACCCAGGGAGAGCAGGGCTGAAAAAAGTCAAGCTTCCAATGAAGTCACTACCGACCTTGAATTAAAGACCCCTGGTTCTTTTGCAGATCAGGATTTATCTCCCGAACAAAGAAAATCCAGCAAGGTGTCAAGGAAGGAAAACAGCTGCACAGAAGGGAGTTCGTTAGGTAGATGTTCATCATCTCATAGTGTTCAGGATAGCTCATCAAGTAGCATAGTTTGGAGCAGAAAGTCCGATGAGTGA 849 0.4346 MDYTAARKTQKAGREKLRRDRLNEQFEELGNVLDPDRPKNDKATILSDTIQLLNDLTSQVSKLKDEYTALNEESRELTQEKNDLREEKASLKSDIDNLNNQYQQRRRTVFPWTAMDHSVMMAPPSYPYPMPMPVPPGPIPMQFYPHFANQNPPVFLNPCSTYVPYIAPNSVVEQQSTQYIVPPVHQSSQSQVSSKLDSKHKSPRESRAEKSQASNEVTTDLELKTPGSFADQDLSPEQRKSSKVSRKENSCTEGSSLGRCSSSHSVQDSSSSSIVWSRKSDE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0110 282 Gene3D - 2 54 IPR036638 GO:0046983
Lal1g0110 282 Gene3D - 55 113 - -
Lal1g0110 282 MobiDBLite consensus disorder prediction 182 196 - -
Lal1g0110 282 MobiDBLite consensus disorder prediction 182 282 - -
Lal1g0110 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Lal1g0110 282 SMART finulus 12 62 IPR011598 GO:0046983
Lal1g0110 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 76 IPR036638 GO:0046983
Lal1g0110 282 PANTHER TRANSCRIPTION FACTOR BHLH121 2 281 - -
Lal1g0110 282 MobiDBLite consensus disorder prediction 248 282 - -
Lal1g0110 282 CDD bHLH_AtILR3_like 11 85 - -
Lal1g0110 282 PANTHER TRANSCRIPTION FACTOR BHLH121 2 281 IPR044579 GO:0003700|GO:0055072
Lal1g0110 282 Coils Coil 46 108 - -
Lal1g0110 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Lal1g0110 282 MobiDBLite consensus disorder prediction 1 22 - -
Lal1g0110 282 MobiDBLite consensus disorder prediction 197 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0110 Lal-Chr1 735387 738811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0110 4 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 61.071 2.82e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal1g0110 HLH 8.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0110 - - gmx:100804250 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0110 1 735387 738811 Lal1g0110 1 735387 738811 ECH
Lal1g0110 1 735387 738811 Lal2g0063 2 353371 356756 ECH
Lal1g0110 1 735387 738811 Lal2g0063 2 353371 356756 LSH
Lal1g0110 1 735387 738811 Lal9g0086 9 553802 561462 LSH