Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0100 ATGGAAGACATTAACATGAGTGGGGAAATTACACTTCCAGGCTTCAGATTTCACCCCACAGAAGAAGAACTCGTTGATTTTTATCTTAAGAACATGGTTGTTGGCAAGAAATTTCGTTATGATGTCATTGGTTTCCTCAACATCTATCACCATGAACCATGGGACTTGCCCGATTTGTCAAAGATGGGGGAAAGAGAATGGTACTTCTTTGTGCCAAGGGACAAAAAGCATGGTAGTGGAGGAAGGCCTAACCGCACCACTAAGAAAGGGTTCTGGAAAGCAACCGGTTCGGACCGGAAAATTGTCACTTTATCTGATCCTAAACGCATCATTGGGTTAAGGAAGACACTGGTTTTTTATGAAGGAAGAGCTCCACGGGGTTACAAGACTGATTGGGTCATGAATGAGTACCGTTTACCAGACAATTGCAAATTACCAAAGGAAATAGTGTTGTGCAAGATATATAGAAAGGCAACTTCTTTGAAAGTGCTGGAGCAAAGGGCAGCATTAGAGGAAGAGACTAAGCAATTGGTTGGTTCCCCTCCTTCCTCTACGGACACCATGTCCTTTAATAGCCAAATGGAAGACCAAACTATGCCCTTACCCTATTTCCAACATGTACTTAAGAAAGAAGCTGAAGAAATGGTATCAATGCCAGTGCAAGAAAACAAAAAGACTTGTATTACATCACTACAATTGCCCTTAGGAAACGAAATGCTACCTGAGCTTCAGTTACCAATGATGACCACAGATTGGACCCAAGATAGCTTTTGGGCTCAGTTAAATAGTCCATGGCTTCAAAACTTGACTCCTACTTACTACAACATATTAAACTTTTAG 840 0.4143 MEDINMSGEITLPGFRFHPTEEELVDFYLKNMVVGKKFRYDVIGFLNIYHHEPWDLPDLSKMGEREWYFFVPRDKKHGSGGRPNRTTKKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGYKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEQRAALEEETKQLVGSPPSSTDTMSFNSQMEDQTMPLPYFQHVLKKEAEEMVSMPVQENKKTCITSLQLPLGNEMLPELQLPMMTTDWTQDSFWAQLNSPWLQNLTPTYYNILNF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0100 279 SUPERFAMILY NAC domain 10 157 IPR036093 GO:0003677|GO:0006355
Lal1g0100 279 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Lal1g0100 279 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Lal1g0100 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 279 - -
Lal1g0100 279 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Lal1g0100 279 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 7 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0100 Lal-Chr1 685606 687518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0100 6 271 NAC Transcription Factor Family AT2G17040 60.791 1.20e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal1g0100 NAM 8.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0100 - - gmx:732555 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0100 1 685606 687518 Lal1g0100 1 685606 687518 ECH
Lal1g0100 1 685606 687518 Lal9g0082 9 536948 538374 LSH