Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0075 ATGATGAGGCTGCAAACATATGCTGGTCTTAGTTTGATTACAACTCTGGCTATTACATATCACGCATTTAATACTAGAGGCCAGTTTTACCCTGCAATGGTTTATCTAGCTACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCATCATGTGTGTTCTATGGCAGTTAACCAAAAAGCTTTTCCTCGGTTCCCTTCGAGAAGCTGAGATTGAGAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCAATTACTATTTTTAGACAGGACTTTTCTGTTACATTTCTTGCAATGGTCACGGCGCTGTTGTTAGTCAAGGCTTTGCATTGGTTGGCTCAGAAGAGACTCGAGTACATAGAGACCACTCCTTCTGTGACCAAGTTGTCTCATGTTCGAATTGTATCTTTTATGGGTTTCCTTCTTTTTCTAGATAGCCTCTTTTTGTACAGTTCTGTGAAGCATTTGATCACAACTTGGCAGCCTTCAGTTTCACTTTTCTTTGCTTTTGATGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACTTTTTACCTCGAACTTATTAGGGACTTGCTTCACTTGTCTATGTACCTCTGCTTCTTTTTTGTGATTTTCATAAACTATGGAGTTCCTTTGCACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAATTCGAGTTGCGGATTACATTCGATATCGTAAGATTACTTCAAACATGAATGACCGATTTCCTGATGCCACGCCTGAGGAGCTTGATGTGAGTGATGCAACCTGCATTATTTGCCGTGAAGAGATGACTTCTGCTAAGAAGCTTATATGTGGACATCTTTTTCATGTTCATTGTCTGCGGTCATGGCTGGAACGGCAACATACCTGTCCTACCTGCAGAGCACTGGTTGTACCACCTGAAAATGGGACAACTGCTGCTGGAGGACAGCAAGGTTCACAGTCAGATGCTCATCAACATGGGGCAGGGACTGGAAGCACAGCTCAAGCTGAAGTTGGCAATGGGGTGGCAACTGCTAATTTGAGTCGGCATCAAGCGAGACTCCAAGCTGCTGCTGCGGCAGCTTCAATATATGAGAACTCCAGTGGATCCACTCAATATCCCCCAGTTCAAAGATCTGTGGTTGAGTCTTCAAGTACCGAGCTTAATAGAGAACAGGCATGCAGTAGCGAACACACACAAAAGCAGTTTGTTATTCCTGGTGGATCAATGAATGTATCTTACCCTCCAACGGGAAACTTCAATTTTCTACATTCCCAAACACACACAGATGCTGTTACTTATGGAGATGGGTTTGGAAATGATCCGCATATGCCAAACTCTCTGGTGGAAGCTCAAAGAAGAGTTCTCCAATTACAGATTGAGATTCTGCAAAATCAGCTCCAGCTTTTGCAGAAGACAAATGTTGGCAAAAGTGTACATGAAGGAGCATCAGTATCAGATAGTAGAGGCAAGGGCATAGCTTCTTCATCTGTAGTATCTACCCATGATGAGATTCAAGACAGTGAAGCATAA 1563 0.4287 MMRLQTYAGLSLITTLAITYHAFNTRGQFYPAMVYLATSKISLVLLLNMGLVIMCVLWQLTKKLFLGSLREAEIERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLVKALHWLAQKRLEYIETTPSVTKLSHVRIVSFMGFLLFLDSLFLYSSVKHLITTWQPSVSLFFAFDDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFVIFINYGVPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELDVSDATCIICREEMTSAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAGGQQGSQSDAHQHGAGTGSTAQAEVGNGVATANLSRHQARLQAAAAAASIYENSSGSTQYPPVQRSVVESSSTELNREQACSSEHTQKQFVIPGGSMNVSYPPTGNFNFLHSQTHTDAVTYGDGFGNDPHMPNSLVEAQRRVLQLQIEILQNQLQLLQKTNVGKSVHEGASVSDSRGKGIASSSVVSTHDEIQDSEA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0075 520 MobiDBLite consensus disorder prediction 499 513 - -
Lal1g0075 520 MobiDBLite consensus disorder prediction 491 520 - -
Lal1g0075 520 Pfam Ring finger domain 271 310 IPR001841 -
Lal1g0075 520 SMART ring_2 272 309 IPR001841 -
Lal1g0075 520 SUPERFAMILY RING/U-box 252 316 - -
Lal1g0075 520 Coils Coil 456 483 - -
Lal1g0075 520 MobiDBLite consensus disorder prediction 320 344 - -
Lal1g0075 520 PANTHER - 1 178 - -
Lal1g0075 520 PANTHER - 179 432 - -
Lal1g0075 520 MobiDBLite consensus disorder prediction 319 344 - -
Lal1g0075 520 ProSiteProfiles Zinc finger RING-type profile. 272 310 IPR001841 -
Lal1g0075 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 317 IPR013083 -
Lal1g0075 520 PANTHER RING ZINC FINGER PROTEIN 179 432 - -
Lal1g0075 520 PANTHER RING ZINC FINGER PROTEIN 1 178 - -
Lal1g0075 520 CDD RING-H2_synoviolin 269 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0075 Lal-Chr1 550041 555012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0075 1 498 C3H Transcription Factor Family AT3G16090 60.227 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0075 K10601 - gmx:100816441 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0075 1 550041 555012 Lal1g0075 1 550041 555012 ECH