Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0073 ATGGGATCGCGGTCCCCGAAATCACGTGGAGAGGAAGAGGAGGAGGGTCGTGGAACCACGGTTTCAGGTCAATCAGGGTCAACTAGCAAAAGTGCTGGGTTGCCATCTAGCCGGAGCAAGCAGGCATTGGTTGCAACTGCTGCTGATAGTAATTTTCTCAGATCAAACCATATTGAATTGCACGGAGATAATGATAGATCACAGGATGCCGTTGCGAGCAGGAAGAAAAAGAGAGGTCAACGGGCTGTTGGAGGTGATAAGAGTGGAAGAGGGCTCCGACAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTTGCAGATGAACTTGTTGCTGAATTTTCCGATCCAAGCAATGGTGTTTTGCCCCCTGATCAGCAGCAGTATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTCAATGTTCTCATGGCAATGGATATCATTTCTAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACTAGTGTGAGTGATGCTGAAGAACTAAAGACAGAGCGTCTTGGACTCAGGAGTAGAATTGAGAAGAAAGCTGCCTATCTTCAAGAGCTGGAGGATCAAAATGTAGGTCTTCAGAACCTTTTACAAAGAAATGGGCAATTATATAGCTCAGGAAATCCTCCCAGCGGAGGTGTATCTTTGCCTTTTATTCTTGTACAGACACGTCCTCATGAAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCACGATGACAACTATGTTCTTAAGGCAATGAAACTTTCTGAGAGATGGCAGAATGATGGCATGCCACCAAATGATGGTGGTGAAGGTTCTAGCATTCCAAGCTTGTATCAATCACATGTTCCTCCTTCAGTTTCAAAACTTCCAATTAGGCCTCCCTCATCATCTCCACTCCCAGGAATATTAAAGGCAAGAGTCTCAGCTTCTCTGAATTGCCTTTTCTTCCATAAAGCATATTTGTATAGCATCTATCCTCATCCATCTCAACCGTAA 1074 0.4376 MGSRSPKSRGEEEEEGRGTTVSGQSGSTSKSAGLPSSRSKQALVATAADSNFLRSNHIELHGDNDRSQDAVASRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGVLPPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSVSDAEELKTERLGLRSRIEKKAAYLQELEDQNVGLQNLLQRNGQLYSSGNPPSGGVSLPFILVQTRPHETVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLSERWQNDGMPPNDGGEGSSIPSLYQSHVPPSVSKLPIRPPSSSPLPGILKARVSASLNCLFFHKAYLYSIYPHPSQP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0073 357 Pfam E2F/DP family winged-helix DNA-binding domain 90 170 IPR003316 GO:0005667|GO:0006355
Lal1g0073 357 MobiDBLite consensus disorder prediction 19 45 - -
Lal1g0073 357 MobiDBLite consensus disorder prediction 59 90 - -
Lal1g0073 357 MobiDBLite consensus disorder prediction 285 305 - -
Lal1g0073 357 SUPERFAMILY "Winged helix" DNA-binding domain 90 171 IPR036390 -
Lal1g0073 357 MobiDBLite consensus disorder prediction 1 18 - -
Lal1g0073 357 SMART DP_2 177 335 IPR014889 -
Lal1g0073 357 MobiDBLite consensus disorder prediction 1 45 - -
Lal1g0073 357 Pfam Transcription factor DP 178 308 IPR014889 -
Lal1g0073 357 PANTHER TRANSCRIPTION FACTOR DP 15 334 - -
Lal1g0073 357 Gene3D Transcription factor DP 176 313 IPR038168 -
Lal1g0073 357 SUPERFAMILY E2F-DP heterodimerization region 177 298 IPR037241 -
Lal1g0073 357 SMART E2F_TDP_2 87 170 IPR003316 GO:0005667|GO:0006355
Lal1g0073 357 Coils Coil 193 213 - -
Lal1g0073 357 CDD DP_DD 175 278 IPR014889 -
Lal1g0073 357 MobiDBLite consensus disorder prediction 59 76 - -
Lal1g0073 357 PANTHER TRANSCRIPTION FACTOR DP 15 334 IPR015648 GO:0005667|GO:0051726
Lal1g0073 357 PIRSF Txn_factor_DP 2 335 IPR015648 GO:0005667|GO:0051726
Lal1g0073 357 Gene3D - 82 175 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0073 Lal-Chr1 532131 539057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0073 88 286 E2F-DP Transcription Factor Family AT5G02470 54.500 2.10e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal1g0073 DP 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0073 K04683 - qsu:112000390 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0073 1 532131 539057 Lal9g0052 9 316629 321603 LSH