Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0061 ATGGCTGAACGCGACGTAGTTTTGAAGGAAGAGGACCAAGAGGTACCACCTGAATATGGAAGGGAGTTTGTCAAGCATTCTATAATTCAAAACACTGATATGAGACTCGAATCAGGGACTTGTAACGTGTGCGCAGCTCCTTGTTCATCTTGCATGCATCTTAACCGAGCTCTCATGGGGTCAAAGGCTGAAGAATCCTCTGATGAAAACCGTCGCCGAGGAGAGGCTAATCAGTATTCTACGGATGATGGTGATGGATCTTCTCTTAGGAGCAGAGTTTGTGAAAGATTGAAGTCTTGTGTCAATGAAACCAGTAACATAATTCTTGTTGATTCAACTCATGATTCTCTATCTGAAAATGCCGACAGTAGACGAGCCTTGTCAAATAAGTATCAGGAATCCAAGTGTTCGGAAGGTTTTGATGACAATGCTTCTTCTACCAGAAGACCCAGTAAAATTGCAAATGGTAGCCATAAAACAAATGACAGAATAACTATATCCTATAGTTCAGCTTCCATTAGTCACTTAGGGGCAGAAGGATCTGGAAGTGGGCCATCTGTTGACTTGCCTGAGATTCTCTCTTCTAACGATGCAGATATCCTGGAAAACTTGTCGGAATGTTGTATGGAAAATGTTGATTCATCATTAACTAAAGAGAGAGCACCTATTATTGTTTCTGGTGAAGAATCTCTTGCAGATAAAGATAGCCCTGTTATTGGTACTGCCAAGGTTTCTCTGGACGTACTTACAAAGTCAGGAGAAGATACTGACAATGTTGTTAGGAATGCTGAAGATGAATATCATAAATGTTCAGTCCATGATGGACTGCACGAGAAGGTTGGGGAGCTGGTTAAGTCACAAAGTGAGCGTGAGCCTCATTCTGAAGATGAGTCTGATACAACAAGCAGTGTCGGAGATGGAAAAGTATGTGACATATGTGGAGATGCTGGTATCGAATATAAACTTGTCATATGTAGTAATTGCAGCGATGGTGCAGAGCACATCTATTGCATGCGACAAAAGCTTGAGAAGGTCCCTGAAGGGGACTGGTTGTGTGAAGAATGCAAATATGCAGAGGAGACTGAAAATCAAAGGCTGGATGATGAAGGAGAAAAACATCATAAATATAGTTCAACTTCACAAGTTTCTGGCAAAAGGTCTTCTGAGAGAGTAGAAGTACGTATAGCTGCAAAAAGGCAAGCTCTTGAAACAAACAGAGTATCACCAAAGGCATCAAGCCCCAAGAAAATGATTTCACTGTCAAGAGAATCTTCTTTCAAGAGCTTAGATAAAGGAAAGAGGGACCTTGGTCATCAAATCCCCATTCGTAACAATGCCGGTGGTAGTGACATAGAACTTGCTCGTTCTCTTTCTGCTGGTCCTCGGAATCAACCTACAAAAAGAGTGTTATTTATTCCAAGCATATTTTTTCTTCTTGTTACCATAGGTACATTTCTGAAATCTAATTCATTCAACCCTACTTCCAAACCAAGAGTAAAACTTGTCAATGGAGTTCCCCAAAAGCAGAAAGCGGGTGGTGAACATACTTCCAAAAATATGGAGGCACCTGCTTGGATGGTAAAAAAATCAATGTCATCCATATCCTCAAATTTGCGTAGTTCGACTTCTACAGAATCAAAAGTTAAAATGCTTTCTCTCAAGTCTGAAACCACTCAGGATTTGAAAGGATCAAGACTTGCAAAAAAATCAGGTGCATTTGACAGGAAACTTCCGTCTAGGATTGGTCGGCCTGTGGTTAGTTCAACTATGACTACTTCTGTTGGTCCCAACACTAAGGGTGAACCGAAGGTAACACCTTGTGATGTAACTGCTAAACCTTCAGCAGTTAACAACATTCAAGAGTCTAAGGTTAACCAAGATGTAAAATTAAGTTCATCATCAAAGTCTTCGAGTAATATAAGCCGTAAAACTTTGGAAGCTCAAGTTATTTCAGAGAGAACATCAACCAAAGTTGATGACACTCAACAGGATGGGATCTCTCGTTCACAAGAGACAACATGTAGTTCTAAAGAGGATATGCATAAAGGTAATAGATTGAAAGCTGTAATCCAGGAAGCTTGGCATGGAAGGCCTAAAATATACAAAAAGAAAGAAATGCCTGATCAAACTGATGTGTATCCTACTTCAGGTACAGACTGGAATTGTGAATTCACTTCTAAAGACCAAGTGTTGGTTTCCAACACATTGAAGAATAGTAAATCTGCTGAAGAAACCAATGTGAAGCAGGAAATCCTTGAGAATTCCACATTTGAAACTTCCAAATGTTTGTCTGCCAATGGTTTGAGGCAACTTAACCTTTGTCCAACTGATTTCTGCTCTCAACTGGGAAAGCCAGATTCTTTTGGTCCTTCACATGAGAAGCCTGTAATGAGAGCCTTGCCTAATCAAGCTTTGGAAGTATCAAATGTTCTTCCGAAGATGTTTGCAATTCCAGAATATGAATATATCTGGCAGGGTGTCTTTGAAGTGCATAGAAGTGGAAAACCACCTGATTTGTATACTGGAATTCAAGCACATTTGTCAACATGTGTTTCCCCTAAGGTTCTCGATGCAGTGAACAAGTTTCTACCGAAAGTTACCCTCACTGAAGTTTCCCGCTTGAGCTCATGGCCTTCACAATTTCATCAAGGTGGTGCTAAAGAAAATAACATTGCTCTTTACTTCTTTGCCAAAGACATTGAAAGGCAAGGTCTATTGGATCACATGATTAGAAATGATTTAGCACTTAAAGGAATCCTTGATGGTGTTGAATTTCTCATATTCCCGTCCAACCAGCTTCCTGAAAATTCACAGCGTTGGAATATGTTATATTTCTTATGGGGCGTATTTAAAGGGAGTAGGAGTAATCATTCAGATTCTGTAGAAAATATTTGTATTCCCAGTTTGAATGTGATGCCAATTGAGAAGGATTTTCCTGCTTCTGTTATGATTTTATCCGAACCCCGCTGTTCGCCAAAGCGCATGGATGAAGAATCAATTGCTTCTGGTAAAGCATGCAGTGCACTTCGCCCGTCCACTTTCTTAGACCAAGGTCATATCATGGTATGTAGGAATTTTGATACGGAAGGAATAGACACTGCAAGTAATATCAGTAAGAATAAAATCTCAGAGAGAATGAACAATGATGAAGACCAAGGAAGGCCTAATAGGAAACAGCTAGAAGATGATCTCAACATTGACATGGAGGCAACATTTCAAGGAGACCTGACTGTAAAAGAAGTCAACTCTCAACAACCTAATGATAAAAAAAATCAGCGCACAGATCTTTCAGATACGGTTATGCAGGCTCGTGCAGTTACTTGTCAGAGGATTCCTTGGAATGAGGTAAATGGCAAATTGGAAGGTGGTGAAAGTTTTAGCAAGAAGCTGAAAACAGATACAAGTGAAAGTTATGGATTTGGCAGTACTGGAAGCAGGGACTCTTTTAATGACAGGTTTGTGTCACTTACAAATAATATTGGTCCCTGTTCTTCAGTTGAGGTCAAAGAATGCAAAGAAGTTTGTGATGAGAAAATCATTCATGAGGATTTTGGAACGGAAAGAGTCTTCTTTCCTATGAAAGAGTCTTATGAGTTCGACGAGGACCGATTTCAAGTTGGGATTCCAAATTTAAATCTTGCTTTGGAGGATGAATTGGAACCATCACATTCAGGTACGCTCCCTTTCTTTGTTGGGGCAGCAGTCAATAAAATTAGCCAGGAAAAACTTTCAGATGTAGTTGCAGATGAGCCGGTGGACAATGATAGTGTTGCTGCATCTCTTTCCCTGTCCTTAGCTTTCCCATCTCCACACAAGGAATACATCAAAACCTGTTTCAAAAGCTGA 3846 0.4017 MAERDVVLKEEDQEVPPEYGREFVKHSIIQNTDMRLESGTCNVCAAPCSSCMHLNRALMGSKAEESSDENRRRGEANQYSTDDGDGSSLRSRVCERLKSCVNETSNIILVDSTHDSLSENADSRRALSNKYQESKCSEGFDDNASSTRRPSKIANGSHKTNDRITISYSSASISHLGAEGSGSGPSVDLPEILSSNDADILENLSECCMENVDSSLTKERAPIIVSGEESLADKDSPVIGTAKVSLDVLTKSGEDTDNVVRNAEDEYHKCSVHDGLHEKVGELVKSQSEREPHSEDESDTTSSVGDGKVCDICGDAGIEYKLVICSNCSDGAEHIYCMRQKLEKVPEGDWLCEECKYAEETENQRLDDEGEKHHKYSSTSQVSGKRSSERVEVRIAAKRQALETNRVSPKASSPKKMISLSRESSFKSLDKGKRDLGHQIPIRNNAGGSDIELARSLSAGPRNQPTKRVLFIPSIFFLLVTIGTFLKSNSFNPTSKPRVKLVNGVPQKQKAGGEHTSKNMEAPAWMVKKSMSSISSNLRSSTSTESKVKMLSLKSETTQDLKGSRLAKKSGAFDRKLPSRIGRPVVSSTMTTSVGPNTKGEPKVTPCDVTAKPSAVNNIQESKVNQDVKLSSSSKSSSNISRKTLEAQVISERTSTKVDDTQQDGISRSQETTCSSKEDMHKGNRLKAVIQEAWHGRPKIYKKKEMPDQTDVYPTSGTDWNCEFTSKDQVLVSNTLKNSKSAEETNVKQEILENSTFETSKCLSANGLRQLNLCPTDFCSQLGKPDSFGPSHEKPVMRALPNQALEVSNVLPKMFAIPEYEYIWQGVFEVHRSGKPPDLYTGIQAHLSTCVSPKVLDAVNKFLPKVTLTEVSRLSSWPSQFHQGGAKENNIALYFFAKDIERQGLLDHMIRNDLALKGILDGVEFLIFPSNQLPENSQRWNMLYFLWGVFKGSRSNHSDSVENICIPSLNVMPIEKDFPASVMILSEPRCSPKRMDEESIASGKACSALRPSTFLDQGHIMVCRNFDTEGIDTASNISKNKISERMNNDEDQGRPNRKQLEDDLNIDMEATFQGDLTVKEVNSQQPNDKKNQRTDLSDTVMQARAVTCQRIPWNEVNGKLEGGESFSKKLKTDTSESYGFGSTGSRDSFNDRFVSLTNNIGPCSSVEVKECKEVCDEKIIHEDFGTERVFFPMKESYEFDEDRFQVGIPNLNLALEDELEPSHSGTLPFFVGAAVNKISQEKLSDVVADEPVDNDSVAASLSLSLAFPSPHKEYIKTCFKS 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0061 1281 SUPERFAMILY FYVE/PHD zinc finger 301 360 IPR011011 -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 138 160 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 284 304 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 62 79 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 118 160 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 284 302 - -
Lal1g0061 1281 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 674 1028 - -
Lal1g0061 1281 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 34 673 - -
Lal1g0061 1281 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1066 1277 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 62 89 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 405 425 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 1043 1057 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 625 681 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 403 445 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 587 610 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 1037 1057 - -
Lal1g0061 1281 ProSiteProfiles Zinc finger PHD-type profile. 307 358 IPR019787 -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 625 673 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 364 390 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 364 378 - -
Lal1g0061 1281 SMART PHD_3 309 356 IPR001965 -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 118 137 - -
Lal1g0061 1281 PANTHER - 674 1028 - -
Lal1g0061 1281 PANTHER - 34 673 - -
Lal1g0061 1281 PANTHER - 1066 1277 - -
Lal1g0061 1281 MobiDBLite consensus disorder prediction 1077 1096 - -
Lal1g0061 1281 Pfam PHD-finger 309 356 IPR019787 -
Lal1g0061 1281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0061 Lal-Chr1 456239 464222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0061 295 392 Core DNA Replication Machinery Family AT4G12620 28.846 3.26e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal1g0061 PHD 4.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0061 - - lang:109325547 2017.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0061 1 456239 464222 Lal1g0061 1 456239 464222 ECH