LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0049	ATGTCTCCATCTTCTTCTGTGACTATTAGTTCCCGCTTTCATGATTCTTTTACTAAAAATGCATTTCGTTCTTATCTCGCTGAGTTCATCTCCACTTTCTTCTTTGTCCTTCTTGTTGTTGGCTCTTCAATGTCTTCCCGGAAAATGATGCCTGATGCAGTGTTGAACCCAACGAGTCTAGTTGTTGGTGGCATAGCAAATGCTTTTGCATTGTCCTCAGTTTTGTATATTGCATGGGACATATCAGGTGGACATGTCAACCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGCCACATTAGTGTACCAACCGCTCTCTTCTACTGGGTTGCTCAATTGATAGCTTCTGTTATGGCTTGCCTTGTCCTCAAAGTCATTCTTGTTGGAATCCATGTTCCAACATACTCAATCGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGTTAGAAGGAGCATTAACATTTGTTTTGGTGTACACTGTGTATGCTGCAAGGGACCCTAGGCGTGGTCCATTAAGTTCAATAGGCATACTTGTAATTGGCTTAATAGCTGGTGCAAGTGCCTTAGCCGCAGGTCCATTTTCTGGTGGCTCAATGAACCCTGCATGTGCTTTTGGTTCAGCAGCCATTGCTGGCAGTTTCAGGAATCAAGCAGTGTATTGGGTTGGACCATTAATTGGTGCAACTATTGCTGGTCTTCTTTATGACAATGCTATGTTCCCTTCTCATGCTACAGATCCAATTAGAGGGGTTTCAGGAGGAATTGGAGTGTAA	774	0.4406	MSPSSSVTISSRFHDSFTKNAFRSYLAEFISTFFFVLLVVGSSMSSRKMMPDAVLNPTSLVVGGIANAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVMACLVLKVILVGIHVPTYSIAEEMTGFGASVLEGALTFVLVYTVYAARDPRRGPLSSIGILVIGLIAGASALAAGPFSGGSMNPACAFGSAAIAGSFRNQAVYWVGPLIGATIAGLLYDNAMFPSHATDPIRGVSGGIGV	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0049	257	Pfam	Major intrinsic protein	19	235	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal1g0049	257	Gene3D	Glycerol uptake facilitator protein.	6	248	IPR023271	-
	Lal1g0049	257	PANTHER	AQUAPORIN-8	8	253	IPR034294	-
	Lal1g0049	257	SUPERFAMILY	Aquaporin-like	15	244	IPR023271	-
	Lal1g0049	257	ProSitePatterns	MIP family signature.	85	93	IPR022357	-
	Lal1g0049	257	PANTHER	AQUAPORIN TIP5-1-RELATED	8	253	-	-
	Lal1g0049	257	PRINTS	Major intrinsic protein family signature	23	42	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal1g0049	257	PRINTS	Major intrinsic protein family signature	67	91	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal1g0049	257	PRINTS	Major intrinsic protein family signature	104	123	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal1g0049	257	PRINTS	Major intrinsic protein family signature	149	167	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal1g0049	257	PRINTS	Major intrinsic protein family signature	181	203	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lal1g0049	257	PRINTS	Major intrinsic protein family signature	218	238	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0049	Lal-Chr1	378568	380475	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g0049	8	254	Major Intrinsic Protein MIP	AT3G47440	64.372	4.34e-109	313

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g0049	K09873		-	gmx:100801448	400.979

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0049	1	378568	380475	Lal1g0049	1	378568	380475	ECH