Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0038 ATGGGTAGAGGGAAGATTGAGATAAAAAAGATTGAGAATGCTAATAGCAGACAAGTTACATTCTCAAAGAGAAGAACTGGGTTGTTGAAGAAGGCGCATGAACTTGCTATTCTCTGTGACGCTGAGGTTGCTGTTATCATTTTCTCAAATACTGGGAAGCTTTTTGAGTTTTCAAGTTCTGGTATGAAGCGAACTCTTTCAAGATACAACGAATGCACTATTTCTTTGGATGAGACAGTAGTGGAATGTAGAAAAGAGACTGATTGTTGGATTCTCATGTCTAATAACAAGTTTTTACTTCAGAAGGAGGAGTCTAAGATGGTGGGGATTCTTAAAGATGAAATTGAAAAGCTAGAAACAGAGCAATTACGGCTGTTGGGTAAGGACCTGACCGGATTGGGCATAGAGGAAGTGAAACATCTAGAGCATCAACTTAGTGAAGGTTTATTGGCTGTCAGAGAGAGGAAGGAGGAATTACTAATGCAGCAACTAGAGCAGTCTAGAATACAGGAACAGAGAGCTATGTTGGAGAATGAAACTTTGCGAAGACAGGCAAGTGCTGTTGAGGAGATCCGTTGTCTGTTTCCATTGACAGAACGTGTAGTCCCATCTTTTCTTCCGTATCACCAGATGGAAAGAAAGAATATCTTGGTAGATAATGGTGTTAAACGTCCCAACCTAACTAGTAACTGCGCAAATGAGAAAGGAGATTCGGACACCACATTGCATTTAGGGTTGCCAAATGATGTCCATCAAAAGAGGAAAGCACCAACCATTTGTAATGATTCAGAGAGTAAAATGGCTTTACTCTGA 813 0.4034 MGRGKIEIKKIENANSRQVTFSKRRTGLLKKAHELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNECTISLDETVVECRKETDCWILMSNNKFLLQKEESKMVGILKDEIEKLETEQLRLLGKDLTGLGIEEVKHLEHQLSEGLLAVRERKEELLMQQLEQSRIQEQRAMLENETLRRQASAVEEIRCLFPLTERVVPSFLPYHQMERKNILVDNGVKRPNLTSNCANEKGDSDTTLHLGLPNDVHQKRKAPTICNDSESKMALL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0038 270 ProSiteProfiles K-box domain profile. 101 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal1g0038 270 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal1g0038 270 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal1g0038 270 Pfam K-box region 105 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal1g0038 270 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 250 - -
Lal1g0038 270 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Lal1g0038 270 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lal1g0038 270 Coils Coil 164 184 - -
Lal1g0038 270 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal1g0038 270 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal1g0038 270 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal1g0038 270 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Lal1g0038 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal1g0038 270 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal1g0038 270 PANTHER MADS BOX PROTEIN 1 250 - -
Lal1g0038 270 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0038 Lal-Chr1 297766 303779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0038 1 254 MADS-box Gene Family AT5G13790 51.969 3.62e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal1g0038 K-box 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0038 - - rcu:8259342 328.946