Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0035 ATGAAGAGATTCAGATCCAACGAGGATCTTCACTCTTACGCCGTTCATAACAATGATTCCAATTCCAATCTCAACCGCACCTTTTCTTCTTCACCTCACAGAACCACCTTCTACTACAAACCTGATCACGGACGCCTCGCTTTAATCTCTTCCTCTTCATCATCATCATCGCGCTACCTCAGAGATCGTGATCGTACGGTGGATGAGGTTCGAGAGGGTTCTAGAATGGTCAGGAAGCGATCAGAGCATGGTTTGGGCAACTTTGATCGGAAGAGGTACAGGGACGGTGGTGGAGATAGGAGTATGATTCACAGGTCTGAGAGTTTCTGTGGCTCTAGGAGGGAGGTTCCTAAGGGGTTTCGGTCAGAGAGGGAAGGGAGTGTTTCCTCCTGGAGGAGAGGGTTGAAGGATTTTGATGAGAGGGGTGTGAGTAGCATAACTCGAATGGAAGATAGAGTTGATTCTGAGAGTGACCAATCCAAGAACAAGAACAAGATTGACGAGTTGCAACCTAACAGTGGAAGTAGCAGTGAAATGGAAGAAGGGGAGCTCCAACCCGAACCTGGAATTGGAAGTACAGAGCAGCATTCTATTCCTTTGGAGACTGATGACACCGAAGTTCAAAATGAATGCCATGCTAATATCGCTGATAATGCTATGGATCAAAGAGACGAGCTGCTTTCTAGTGAAAAAGAGGTAAAACCTATTGAGGGTTTTGATTCAGAGGTGAAAGATGCAGAAAAGGAAGCTGATAAGGTGGTTCAACATGATCCAATTGAAAAGTTGATTGTTACTCAGACTGAAATTGACACCATTACTGAGTGTTTGAAGGAAAACAAGAAGGATGAACTTTTGAAGGTTGTTACTGAGTGCAAGGAGGAAACAAAGAAGGGTGCAGATATGGAGGTTGTGTTGTCTAACGAAGAGGAGCATCATAAGCAAGAGAAGGGTGTGGACCTAGAAACCAGCTCAGATGTTGACAAACCTCAGTTAAAAGATGAAGTCTCAACAGAAAATGAAGCTGCTAAAGAAGAAGATAGAGAAATAATGATGGAGACAGTGGTCAACAGCAATGCCAGGGATAAAGGCAAAGGCATCTCTGTTACACCTACTGGTGTTGCTCATTCTGCAGAAGATGTATTATGGATTGACAGAGGACCGAGAGACCTCACAGCATGTGCTGCTGATGTTCTGGAAGGTCCAAGCACCAGAGGATTCCAGTTGTTTTCGAGATCTTCCCTTAGAAAAGTCGAGAAAACGGAGCACTCAGTTCTCAACAAGCAGAAGGATGAGAGTCTTGAAATGGAGCAACTTGATCTTTCTCTTAGTTTGCCAAATGTTCTGTTACCCGATGGTGCTCACGAGACAACAACAATAATACAAGTCCCGGGATCTCCGAGTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCTGATGGTTTTACTGCATCCATGTCCTTTTCAGGTTCCCAATCACTCTATCACAACCCTAGCTGTTCTCTAACAAAAAATTCATTGGACTTTGAACAATCTGTTGGCAGTCGCCCCTTATTCCAGGGAATAGATTGGCAAGCCCAGTCTCAATGTGATCCCAAAGAAAAAGAAGTTCAGTTTTCTCAAAGAGCTTCAATGAACGGAAATGGCTCTTCTCACCAGTCTCAACCATCATGGGGCATTTTAGATGCTCAAGCTGTTAAAGTCCAACAACCAAGGGTTATAGAAGGGAGCTCAAAAATGATTAATGGACATGAGAAGCAATTGAGTTTTCATACGCAGCTTTCAGGACACCCAAGACGCCATGATGATATTAGATCTCCTTCACAGAGTGTTGGGTCTCACGGCACTGGATCGAATTATAGTTTTGATAAAAAGAGGGATGTTGGGGACAGGAATGGTGGTGGGTTGTATCGAACTACTAGCCAGAAGGAACAGGAACATGTTCTGATTGGTGGAGTTGATTTTGTTGATACAATCATTGCAAAAATAGTTTCGGAACCTGTGCATGTAATGTCCAGAAAGTTCCATGAAATGACTGGACAGTCTGCAGCATGTCTAAAAGAGGGCATTCGTGAACTCATGGTTAATGCTGATAAGCATGGACAGATACTTGCTTTTCAGAAAGTTCTGCAGAACAGGTCTGATATAACCTTGGAGGTCCTACTGAATTGCCACCGCGTGCAACTGGAAGTCTTGGTTGCTTTAAAATTTGGTTTACCTCATTATCTTCACATAGACAACAGCATTTCATCTTCGGTGTTGGCTCAAATTTTTCTCAATCTAAGATGTAGGAATCTCTCATGTCGAAGTCAGTTGCCTGTGGATGAATGTGATTGCAAGGTTTGTGTGCAGAAGAATGGTTTTTGCAAGGACTGCATGTGTGTCGTGTGTTCTAAGTTTGACAATGCATCAAATACATGTAGCTGGGTAGGGTGTGATGTTTGCCTTCACTGGTGCCATATCGATTGTGGATTGCGGGAATCTTATATTAGGAATGGACACAATACTACTGGGACAAAACGGATGACAGAGATGCAGTTTCATTGTATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTATTTCAAAATTTTGCAAAAGGCTGGTCAGTTGAAACTCTTTACAAGGAGCTAGAATATGTGAAGAGAATTTTTTCTTCCAGCAAGGATATGAGAGGGAGGCAGCTGCATGAGATTGCGGGTCAAATGCTGCCGATGTTGGAAAATAAGTCTAACCTCCTTGAGGTTTTAAGGCATATCATGTCTTTCCTTTCCAATGGTGGTGAATCTTCCAAACTAGCCATGACAACAAGTTTTTCTGGGAAGGAACAAGTTAAAGAAAACAATGGGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTGAAATCACGTTATCAAGAAAAGCCACCTTTGTTAGAAAGGCCAGCAAGCATCCTTCATAGCTTTGACCAGAGTGATAAAAGGTCTCTGGTGCAAGAGATGCAGATGAGTAGTGTCCAGAAGGACTTTGGTTTTGATGAATTGGAGAGCATAGTCAAAATTAAACAGGCAGAGGCTAAAATGTTTCAAGCACGTGCTGATGATGCAAGAAGAGAAGCTGAAGGGTTGAAACGCATTTCCCTCGCCAAGAATGAGAAACTTGAAGAAGAGTACGCTAATCAAATCACTAAGTTGCGATTGGCTGACACCAAGGAATTGCGTAAACAAAAATTTGAAGAACTCCAAGCATTAGAGAAGGCACATCTGGAATATTTCAGCATGAAAATGAGAATGGAGGCAGACATTAAAGATCTTATATCCAAAATGGAAGCTACTAAAAGAAGCCTTGCTGTGTGA 3360 0.4292 MKRFRSNEDLHSYAVHNNDSNSNLNRTFSSSPHRTTFYYKPDHGRLALISSSSSSSSRYLRDRDRTVDEVREGSRMVRKRSEHGLGNFDRKRYRDGGGDRSMIHRSESFCGSRREVPKGFRSEREGSVSSWRRGLKDFDERGVSSITRMEDRVDSESDQSKNKNKIDELQPNSGSSSEMEEGELQPEPGIGSTEQHSIPLETDDTEVQNECHANIADNAMDQRDELLSSEKEVKPIEGFDSEVKDAEKEADKVVQHDPIEKLIVTQTEIDTITECLKENKKDELLKVVTECKEETKKGADMEVVLSNEEEHHKQEKGVDLETSSDVDKPQLKDEVSTENEAAKEEDREIMMETVVNSNARDKGKGISVTPTGVAHSAEDVLWIDRGPRDLTACAADVLEGPSTRGFQLFSRSSLRKVEKTEHSVLNKQKDESLEMEQLDLSLSLPNVLLPDGAHETTTIIQVPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSLDFEQSVGSRPLFQGIDWQAQSQCDPKEKEVQFSQRASMNGNGSSHQSQPSWGILDAQAVKVQQPRVIEGSSKMINGHEKQLSFHTQLSGHPRRHDDIRSPSQSVGSHGTGSNYSFDKKRDVGDRNGGGLYRTTSQKEQEHVLIGGVDFVDTIIAKIVSEPVHVMSRKFHEMTGQSAACLKEGIRELMVNADKHGQILAFQKVLQNRSDITLEVLLNCHRVQLEVLVALKFGLPHYLHIDNSISSSVLAQIFLNLRCRNLSCRSQLPVDECDCKVCVQKNGFCKDCMCVVCSKFDNASNTCSWVGCDVCLHWCHIDCGLRESYIRNGHNTTGTKRMTEMQFHCIACDHPSEMFGFVKEVFQNFAKGWSVETLYKELEYVKRIFSSSKDMRGRQLHEIAGQMLPMLENKSNLLEVLRHIMSFLSNGGESSKLAMTTSFSGKEQVKENNGVAGPSQEAAWLKSRYQEKPPLLERPASILHSFDQSDKRSLVQEMQMSSVQKDFGFDELESIVKIKQAEAKMFQARADDARREAEGLKRISLAKNEKLEEEYANQITKLRLADTKELRKQKFEELQALEKAHLEYFSMKMRMEADIKDLISKMEATKRSLAV 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0035 1119 CDD PHD_OBE1_like 797 856 - -
Lal1g0035 1119 Pfam PHD - plant homeodomain finger protein 767 890 IPR032881 -
Lal1g0035 1119 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1118 IPR004082 -
Lal1g0035 1119 PANTHER PROTEIN OBERON 4 1 1118 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 534 560 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 70 129 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 226 252 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 146 213 - -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 678 700 IPR004082 -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 717 732 IPR004082 -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 732 747 IPR004082 -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 758 779 IPR004082 -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 804 824 IPR004082 -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 877 896 IPR004082 -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1014 1034 IPR004082 -
Lal1g0035 1119 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1053 1075 IPR004082 -
Lal1g0035 1119 Pfam Coiled-coil region of Oberon 992 1106 IPR032535 -
Lal1g0035 1119 Coils Coil 1020 1088 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 595 644 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 146 165 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 166 180 - -
Lal1g0035 1119 MobiDBLite consensus disorder prediction 302 344 - -
Lal1g0035 1119 Coils Coil 1096 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0035 Lal-Chr1 277280 281975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0035 767 942 PHD Gene Family AT5G57380 24.862 6.99e-12 67.8