Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0024 ATGGATTCAAACCCTAATCCCCATTCTCATCCTGATCCATCCGAAACACCAAACACAAACGGCACTTCCGATAACAACAACATCGATGACGGCGACTCTCACCTTCCTATTCCAAAGCCATCTCTCTCCACCGACAAGGACCAATCCGCCGGAGAGGATGATTCCACTAGCAAGCGCCGCCGTCGAAAGAGCCGCTGGGACCCACAGCCAGATTCAAACGACCAAAACGGCTCCGATTCCGGAACCAAGAAGAGGAAGTCACGATGGGCGGAGGAACCAACGCCGGCGGCATCATTTAACCTCGGCGATCTCATGGGATTGGGAGGTATCGAATTAGATAGCGAGATTCCTGTTTTGAATTCTAGGCTTTTAGAGATTAGTAGAATGTTGCAATCTGGTTTACCGTTAGATGATCGCCCTGAAGGTGCTCGTTCCCCTTCGCCCGAGCCAATCTATGATAACATGGGCGTTAGGATTAATACTCGTGAATATCGTGCTCGTGAGAACTTGCAAAAACAGAGGCAAGAAATCATATCCACTATTATAAAGAAAAACCCTGCTTTTAAGCCTCCTGCGGATTATAGGCCACCCAAGCTTTATAAAAAGCTTTATATTCCGATGAAGGAGTACCCTGGTTATAATTTCATTGGGCTTATTATTGGGCCCAGGGGGAACACACAGAAGCGTATGGAAAAGGAAACTGGTGCCAAGATTGTGATCCGGGGTAAAGGTTCGGTGAAAGAAGGGAGGCTGCAACAGAAGAGGGATTATAAGCCTGATCTTTCTGAGAATGAGGATTTGCATGTTTTGGTAGAGGCAGAGACACAGGAGTCACTGGAAGCTGCTGCTGGTATGGTGGAGAAGCTGTTGCAGCCGGTGGATGAGGTGTTGAATGAGCATAAGAGGCAGCAGCTTAAGGAGCTCGCTGCGTTGAATGGGACGATTAGGGATGAAGAGTTTTGCAGATTGTGTGGTGAGCCTGGTCATCGTCAGTATGCGTGTCCTACTAGGAATTCGACGTTTAAGAGTGAGGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAAGTATAGATTGTCCTGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTTGCAGAGTTGGGTGGTTCTGTTCCTGAATCTGCAACAACACAAACCAATGTATTGGCAATCGGTTCTGGAAATTCTGGAAGCAATCCTCCATGGACTAACAATTTCGGATCAAGTGCTGGCACACAACATGCTGGATTAGGGTTTAATCCAGCTAAAAAGGAAATCGATGATACAAACTTGTACATCGGGTATTTGCCACCCACCCTTGAGGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTGATGGCAAAAGTTATAAAGGACCGAATGACTGGTTTAAGTAAAGGATATGGATTTGTCAAGTATGCTGATATTCAAATGGCAAACACTGCAATTGCGGCCATGAATGGTCATCACCTTGAGGGTCGGACAATTGCTGTGAGAGTTGCCGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGGCCACCAGCATCTTCGATGCCAAGTTATCCTGTTCCAACCCAACCACATGGTGCCTATCTATCCCAACAATATAGTGCCGGTGGTCCCATTGGAAGTGCACCCCCGGGGAATTACGGTGGTACCCCCGTTCCATGGGGACCTCCTGTCCCTCCTCCATATACACATTATCCTCCTCCCCCACCTGGGTCAACTATGTACCCTCCTATGCAAGGTCACCCTTTGCCTCCTTATGGTGTTCAATATCCACCTCCACCTGGTGCTCCGCCACAGCCATCAACAACTTCTAGTGAACCGCAACAGAGTTACCCTCCTGGAGTTCAGTCTGATAATAGTACTTCCTCCACTCAGCCTGTACCACCCAATGTATATGGGAACTCAGTACATTCGATGCCACCACCAGCCCAACTTACATATCCTGCATCTTATGGCTATCCACCTTACTACAGTGCAGTTCCTCCGCCACCCCCGGTTCCTGTCTCGACTCCAGACCAATCCCACAACATGGCTAACGTGCCATGGGCCAGTAATCCTCCAGTGCCACCACCTCCTGCTTCATCTGCAGAGAATCAATCTCAGGGAATTGGAAATGTGCCTTGGGCCACAAATCCACCAGTGCCTCCTCCTGCTTCATCAGTAGAGAAAATATCATATGGTGCAGATTCTGAGTATGAGAAGTTCATGTCAGAGATGAAATGA 2265 0.4817 MDSNPNPHSHPDPSETPNTNGTSDNNNIDDGDSHLPIPKPSLSTDKDQSAGEDDSTSKRRRRKSRWDPQPDSNDQNGSDSGTKKRKSRWAEEPTPAASFNLGDLMGLGGIELDSEIPVLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGVRINTREYRARENLQKQRQEIISTIIKKNPAFKPPADYRPPKLYKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDYKPDLSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLKELAALNGTIRDEEFCRLCGEPGHRQYACPTRNSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATTQTNVLAIGSGNSGSNPPWTNNFGSSAGTQHAGLGFNPAKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIQMANTAIAAMNGHHLEGRTIAVRVAGKPPQPVVPPGPPASSMPSYPVPTQPHGAYLSQQYSAGGPIGSAPPGNYGGTPVPWGPPVPPPYTHYPPPPPGSTMYPPMQGHPLPPYGVQYPPPPGAPPQPSTTSSEPQQSYPPGVQSDNSTSSTQPVPPNVYGNSVHSMPPPAQLTYPASYGYPPYYSAVPPPPPVPVSTPDQSHNMANVPWASNPPVPPPPASSAENQSQGIGNVPWATNPPVPPPASSVEKISYGADSEYEKFMSEMK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0024 754 MobiDBLite consensus disorder prediction 515 566 - -
Lal1g0024 754 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 700 754 - -
Lal1g0024 754 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 43 700 - -
Lal1g0024 754 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 514 IPR000504 GO:0003723
Lal1g0024 754 MobiDBLite consensus disorder prediction 515 532 - -
Lal1g0024 754 MobiDBLite consensus disorder prediction 46 69 - -
Lal1g0024 754 PANTHER RNA-BINDING PROTEIN RELATED 700 754 IPR045071 -
Lal1g0024 754 PANTHER RNA-BINDING PROTEIN RELATED 43 700 IPR045071 -
Lal1g0024 754 Gene3D - 112 190 - -
Lal1g0024 754 Gene3D - 320 372 - -
Lal1g0024 754 Gene3D K Homology domain, type 1 191 319 IPR036612 GO:0003723
Lal1g0024 754 ProSiteProfiles Zinc finger CCHC-type profile. 347 361 IPR001878 GO:0003676|GO:0008270
Lal1g0024 754 CDD SF1_like-KH 201 316 - -
Lal1g0024 754 MobiDBLite consensus disorder prediction 674 739 - -
Lal1g0024 754 SMART rrm1_1 437 510 IPR000504 GO:0003723
Lal1g0024 754 SMART kh_6 199 291 IPR004087 GO:0003676
Lal1g0024 754 MobiDBLite consensus disorder prediction 616 655 - -
Lal1g0024 754 MobiDBLite consensus disorder prediction 1 30 - -
Lal1g0024 754 Gene3D - 415 518 IPR012677 -
Lal1g0024 754 Pfam KH domain 214 286 IPR004088 GO:0003723
Lal1g0024 754 SMART c2hcfinal6 346 362 IPR001878 GO:0003676|GO:0008270
Lal1g0024 754 SMART c2hcfinal6 320 336 IPR001878 GO:0003676|GO:0008270
Lal1g0024 754 Pfam Splicing factor 1 helix-hairpin domain 85 195 IPR032570 -
Lal1g0024 754 ProSiteProfiles Type-1 KH domain profile. 214 286 - -
Lal1g0024 754 SUPERFAMILY Retrovirus zinc finger-like domains 317 363 IPR036875 GO:0003676|GO:0008270
Lal1g0024 754 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 438 507 IPR000504 GO:0003723
Lal1g0024 754 MobiDBLite consensus disorder prediction 586 615 - -
Lal1g0024 754 SUPERFAMILY RNA-binding domain, RBD 428 528 IPR035979 GO:0003676
Lal1g0024 754 MobiDBLite consensus disorder prediction 586 659 - -
Lal1g0024 754 ProSiteProfiles Zinc finger CCHC-type profile. 321 335 IPR001878 GO:0003676|GO:0008270
Lal1g0024 754 MobiDBLite consensus disorder prediction 1 103 - -
Lal1g0024 754 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 199 325 IPR036612 GO:0003723
Lal1g0024 754 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0024 Lal-Chr1 200636 202900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0024 436 567 Eukaryotic Initiation Factors Gene Family AT3G16380 32.374 1.77e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0024 K13095 - gmx:100800982 981.474