Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0013 ATGAGTCCAATTAATTGGGCAGGGCAGTTTGGTGACACCACATACACCAAAGTGTTTGTTGGAGGGTTGGCGTGGGAAACTCAAAAGGAGACGATGAACAAGTATTTTGAGCAATTTGGTCAGATCTTGGAGGCTGTTGTCATCACTGATAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGCGAAGCAGATGCGGCCATGAGAGCTTGTGTGAATGCTGCTCCTGTTATTGATGGTCGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTACAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGTGAGGAACTTTAGGGTAATGGGTTGTTTCCAGACAGGGTTGGGAGGAGGGAGTTTGGGCTCAGCTTTTGCTTCAGCACCAACCTTCCCTCCTTATGCCATCCAGCAAGGGATACCTTATAATCTTTATGGGTATTCTCCTTACTCGCCGGATTACACTTACCCCACGAGCTACTATAGTGTGTATGGAGCAGCAGTTTATGGAAGTGGTGGTGGTGGTGCATTCTACCCATACGTGCATTACGGTGGAGGAGAAGGAAGTGGCGGTGGCTTAAGCAGCGGATATAGTTCAGTGAACTACCCAGCACAGATATTTGAGTATTCTCCAATTGGTGGAAATGGTAGCAGCTATCCTCAACACTATGCAACACCCATCTCTCTTGCACCTTCCCCTGCAGGGGTCACAATGCCTCTTCAAGCTCCAATTCCTCTTCGCTAG 765 0.4797 MSPINWAGQFGDTTYTKVFVGGLAWETQKETMNKYFEQFGQILEAVVITDKATGRSKGYGFVTFREADAAMRACVNAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGVRNFRVMGCFQTGLGGGSLGSAFASAPTFPPYAIQQGIPYNLYGYSPYSPDYTYPTSYYSVYGAAVYGSGGGGAFYPYVHYGGGEGSGGGLSSGYSSVNYPAQIFEYSPIGGNGSSYPQHYATPISLAPSPAGVTMPLQAPIPLR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0013 254 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Lal1g0013 254 PANTHER BOULE-RELATED 1 243 IPR037366 GO:0003729
Lal1g0013 254 PANTHER OS01G0876800 PROTEIN 1 243 - -
Lal1g0013 254 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lal1g0013 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lal1g0013 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lal1g0013 254 Gene3D - 10 97 IPR012677 -
Lal1g0013 254 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0013 Lal-Chr1 160159 168116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0013 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 6.94e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0013 - - adu:107477578 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0013 1 160159 168116 Lal9g0011 9 66776 71805 LSH